- Transcript 'KH2012:KH.C10.145.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.145.v1.A.nonSL5-1
Possible name(s)
HMCN1; SPON1; THSD7A
Gene model
Location
KhC10 [252,838 / 258,777]
Amino acid sequence
Length: 488
>KH.C10.145.v1.A.nonSL5-1
NMKGKGFLILFVLLFLVIQGEAWRRRRRRRRACTAVNCAWRLGTCSTTCGPGTKTYVKTR
VNSCGGSCVQPAAVACNLRACPINCVTSAWSSWGTCSKTCGAGGVEIRTRTVTTAAQHGG
TACPSLTESKACNQVCMNNGTFTGGRCVCVGSYTGTCCQTPPPVHCAMSAWSTWGTCSKT
CGAGGVAVRTRSVVTHSQHGGRNCTGALRETKSCNEICLNSGNFTSNVVNNVTHSSCKCH
AGYAGACCQRKVPVHCVTSAWSAWSNCSKTCGGGESFRTRSIVTPHKHNGTVCPALRETK
ACNMICYNGGNYSTNGCVCVGGHNGSCCEIKPSPVHCVLSTWSSWSNCSKTCGAGGVKTR
TKSVVTEALYGGRNCSGNRSESKPCNHICYNGGNYSLIQTPYKIGHACICHGGYTGSCCQ
VPPGINIDLTINIYETIYVIWEPYNPTHHRSHSCGGMGAGGEGEEGEGEGGGMRWDEDKE
ETELESLI
Nucleotide sequence
Length: 1,812
>KH2012:KH.C10.145.v1.A.nonSL5-1
ATACTGATAGAATATGAAGGGAAAGGGGTTTCTTATTCTGTTTGTTCTTTTGTTTCTGGT
TATTCAGGGGGAAGCGTGGAGAAGGAGGCGTCGACGCCGTCGAGCTTGTACGGCTGTTAA
TTGTGCCTGGAGACTTGGTACTTGCAGTACTACGTGTGGACCCGGGACAAAAACATATGT
TAAAACAAGAGTAAACTCGTGTGGCGGCTCATGTGTTCAACCTGCAGCAGTGGCTTGTAA
CCTTAGGGCGTGCCCAATTAATTGCGTGACATCCGCGTGGTCATCGTGGGGTACGTGTTC
AAAGACATGCGGAGCGGGAGGTGTAGAAATTCGTACAAGGACTGTCACGACCGCTGCCCA
ACATGGTGGCACTGCATGCCCGTCACTAACGGAATCAAAAGCTTGCAACCAAGTTTGTAT
GAACAACGGGACATTTACTGGCGGAAGATGTGTTTGTGTTGGTAGTTATACTGGTACTTG
CTGTCAAACACCACCTCCAGTTCATTGCGCCATGTCCGCTTGGTCGACTTGGGGAACGTG
TTCGAAGACATGCGGGGCTGGAGGTGTGGCAGTTCGTACAAGGTCGGTTGTCACGCATTC
TCAACACGGAGGAAGAAACTGTACGGGTGCACTTAGGGAAACGAAATCCTGCAACGAAAT
CTGTTTAAATAGTGGCAACTTCACTTCAAATGTTGTCAACAACGTCACTCATTCCTCTTG
TAAATGCCATGCAGGATATGCTGGAGCATGTTGTCAAAGGAAGGTACCAGTACATTGCGT
CACATCCGCCTGGTCGGCATGGAGCAATTGTTCAAAGACATGTGGAGGGGGCGAATCGTT
TCGAACCAGATCAATTGTCACGCCTCATAAACATAACGGCACAGTGTGTCCAGCACTTCG
GGAAACCAAAGCTTGCAATATGATTTGTTACAACGGTGGAAATTATTCAACGAATGGTTG
CGTGTGTGTCGGTGGTCACAATGGAAGTTGTTGCGAAATCAAACCTTCTCCAGTTCATTG
CGTTTTGTCGACTTGGTCATCATGGAGCAACTGTTCAAAGACATGCGGAGCAGGAGGTGT
CAAAACTCGTACAAAGTCGGTTGTCACTGAAGCTTTATATGGCGGCAGAAATTGTTCAGG
CAATCGTTCGGAGTCAAAACCCTGCAACCATATATGCTACAACGGTGGCAACTACTCTTT
GATACAAACCCCTTACAAAATTGGCCACGCTTGCATTTGCCATGGTGGTTACACAGGATC
TTGCTGCCAAGTTCCACCAGGAATCAACATCGATTTAACAATCAATATTTATGAAACCAT
CTATGTGATATGGGAGCCTTACAATCCAACTCACCACCGTTCTCACTCTTGTGGGGGAAT
GGGAGCAGGAGGAGAGGGAGAAGAAGGAGAGGGAGAAGGAGGAGGAATGAGATGGGATGA
GGATAAAGAAGAAACTGAACTTGAATCTCTCATTTAGAGATCGATGTGTAAGAGTTGCAA
TCAATGTATTCGGATAAAGACACCTTTCTTGAAAGAGTGAAAATAAAAACAACTACTTTG
TAATTTACTTTCTATTGATTTTGTTTATCTCTAAACAATGACATTAAATATGAGGTATGT
GAACATGCCAGGTGTGTCTGATGTATATGAATACACACATGTTATATTTTGACATGACAT
GTTATATATTTAACATGGTATATATAAATGAAATGTTATGTGGTACACAGGTTATATATT
TAACTTAATAGGTTATAAACATTTATACTTTAGCAAATATTTTTATGCTTCGTTTTTAGC
CAGCAATAAAAG
| SMART |
TSP1_rpt (IPR000884) - T[40-82] 0.68 - T[87-137] 9.4E-10 - T[168-219] 1.0E-11 - T[258-307] 1.3E-9 - T[339-390] 4.2E-8 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[83-133] 1.31E-11 - T[164-215] 1.18E-12 - T[254-304] 9.94E-13 - T[335-386] 2.22E-12 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[83-132] 1.3E-13 - T[163-218] 1.9E-12 - T[254-302] 1.7E-14 - T[334-389] 6.0E-12 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[84-137] 11.253 - T[165-219] 12.09 - T[255-307] 11.475 - T[336-390] 11.762 |
| Pfam |
TSP1_rpt (IPR000884) - T[88-135] 2.3E-8 - T[169-215] 4.1E-10 - T[259-304] 1.1E-10 - T[340-386] 1.4E-9 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[237-248] . - T[408-419] . - T[408-419] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[381-420] 8.737 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 28.212 % | 92.8 | 1.16E-19 |
| THS7B_HUMAN | 26.593 % | 84 | 5.52E-17 |