- Clone 'ciem840f18' >
- Clone 'cign081j24' >
- Transcript 'Moocul.CG.ELv1_2.S53...' >
- Transcript 'KH2012:KH.C10.150.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.150.v1.A.SL1-1
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
KhC10 [879,513 / 893,885]
Amino acid sequence
Length: 636
>KH.C10.150.v1.A.SL1-1
SSLTSEHNPTNMMHPGSNFRPAFPLEGQGRVNQLGGMFINGRPLPSHVRHKIVEMAAHGV
RPCVISRQLRVSHGCVSKILCRYQETGSIKPGAIGGSKPKVATADVDNKIEEYKKENPGI
FSWEIRERLIKEGICDRSNVPSVSSISRTLRAKGCDVENESESSARLDPGNRSSSSGGEP
NEVGGSDSESEPDLPLKRKQRRSRTTFSAEQLDELERCFERTHYPDIYTREELAQRTRLT
EARVQVWFSNRRARWRKQMAAQQFHGIPAHHPHHLSPHLGYPHTMPGSVGQAAHNYMLQT
SGAHHVQSMHESFAHTASSHDHGSSLHRPHASVLTSPVHHASQAIRYDTTDPLNQSAAAA
YGLMGASAAAAAAAARYSQYPSAAAFGDAYPIHYHHHSTSPPSGSSIFGFPSHTRQTATN
PVELTTGNPHSGPNSSPIDVGSPGEAGNHPLHQQHFVLAQSARRAHQASNQRNHHNQHHS
GETTTAPSTSPASNGDGHPTTGIESQSRAYSALAGQQHHNTDLHSSTSVAGQQSTAMLSS
SVDHSSNVFAGQERGAPSSRAGYGVGPSGFATGEVLPTSSAASHQSYASCQYSPYGQASG
DYGSAGIAALRMKSREHSASIGLIPVGGGPSVQHAY
Nucleotide sequence
Length: 2,460
>KH2012:KH.C10.150.v1.A.SL1-1
GCCCCGAATTGCTTTACAATTGCAATAAATCTTATAAGAGAGAAAGATTAAATTATTGTT
GTAAAGTAGTCTGACTTCTGAACACAACCCAACAAACATGATGCATCCAGGGTCTAATTT
CCGACCAGCTTTTCCGTTGGAAGGTCAAGGGCGAGTAAACCAACTCGGTGGCATGTTCAT
AAACGGTCGCCCTCTTCCCAGTCATGTACGACATAAGATAGTGGAGATGGCAGCTCATGG
TGTGCGACCGTGTGTCATAAGTCGACAGCTAAGGGTCTCACATGGATGTGTCAGTAAAAT
TTTATGCAGATACCAAGAAACAGGATCAATTAAACCGGGAGCAATCGGTGGCAGTAAACC
AAAAGTAGCCACCGCAGATGTCGATAATAAAATAGAAGAATACAAAAAAGAAAATCCGGG
AATCTTTAGCTGGGAAATCAGAGAACGACTTATCAAGGAAGGTATATGTGATCGAAGTAA
CGTTCCTTCGGTCAGTTCTATTAGTCGAACTCTGCGTGCAAAAGGTTGTGACGTCGAAAA
CGAATCAGAATCCAGCGCAAGACTCGATCCAGGTAACCGCTCTTCTTCTTCCGGAGGAGA
GCCGAACGAAGTCGGAGGATCCGACAGTGAGTCAGAGCCAGATCTTCCTCTTAAAAGGAA
GCAAAGAAGAAGTAGGACGACTTTTAGCGCGGAGCAGCTGGACGAGCTAGAGAGATGCTT
TGAAAGAACTCATTATCCTGATATTTATACAAGGGAAGAACTTGCTCAAAGAACAAGACT
AACTGAGGCTCGAGTTCAGGTGTGGTTCAGCAACAGACGGGCAAGATGGCGGAAGCAAAT
GGCGGCTCAACAATTCCATGGCATTCCAGCCCATCACCCCCACCACCTATCACCCCACCT
CGGGTACCCACACACAATGCCCGGGTCAGTGGGCCAAGCTGCACATAACTATATGTTGCA
GACAAGTGGGGCACATCATGTACAGAGCATGCATGAAAGCTTTGCACATACGGCGTCTTC
TCATGATCACGGTTCCTCTCTCCATCGCCCCCATGCGTCTGTACTTACGTCACCAGTTCA
CCACGCGTCACAAGCCATTAGATACGACACCACAGATCCACTTAATCAAAGTGCAGCCGC
TGCTTATGGTTTAATGGGAGCATCAGCTGCAGCAGCGGCCGCAGCAGCTCGCTATAGTCA
GTATCCATCGGCCGCTGCTTTCGGCGACGCTTACCCGATACATTATCACCACCACTCAAC
GTCCCCACCTAGCGGTAGCTCGATTTTCGGTTTTCCGTCACACACCCGACAAACTGCAAC
AAACCCAGTCGAGCTCACCACCGGGAACCCCCATTCCGGCCCCAACTCTTCACCCATCGA
TGTGGGTTCACCCGGAGAAGCGGGGAATCACCCCCTGCACCAGCAACACTTTGTTTTAGC
ACAGAGTGCACGAAGAGCCCACCAAGCAAGCAATCAACGCAATCACCACAACCAACACCA
CAGCGGGGAAACTACCACCGCACCTTCAACGTCACCAGCATCAAATGGAGATGGACACCC
AACAACTGGAATTGAATCGCAATCGCGAGCATATTCAGCACTAGCAGGTCAACAACACCA
CAACACTGACTTGCATAGCTCAACCTCCGTAGCGGGCCAGCAATCGACAGCTATGCTCTC
TTCGAGCGTCGACCACTCAAGCAATGTATTCGCTGGACAGGAGAGGGGTGCGCCGTCATC
TCGAGCCGGATACGGTGTTGGCCCATCAGGATTTGCAACTGGTGAAGTACTACCAACATC
AAGTGCTGCTTCACATCAATCTTACGCATCATGTCAATACTCACCGTACGGACAAGCCAG
TGGTGATTATGGAAGTGCCGGAATAGCTGCTCTACGCATGAAATCCCGGGAACACAGCGC
TTCAATTGGACTTATCCCTGTCGGCGGAGGACCGAGCGTTCAGCATGCATATTGACCGTA
TGCGAAACAACAGCAGCATGAAGAATATTACAGACCACCAACTCACTTACGTTGGTGAGT
GTGTCAAAGACTGTGTGGAGTGACACAAACATGCTGCCACGTTCTCGCGTTTCGATTTGT
CGTATTTGACGTATATTAGTTCTACCTTGGCCGTAGTAGGCTCTGAGTGTTGCGTACTGC
CTTTTGTTTTTGTACCTTTTATTTGATTTGCCAAATGTGTATTTGCGGACCCGTTTATGG
AACACTAGCCGTAAATTACGTTTCTGTAACTTTGTCATTTCTGCAACAGCCTGACTGTTA
GCAACATTATGATATTTGCTGTTAAACCTTTTGCCAAACGCCATTATCGTGGCGGGGTTG
ACTTTGCTTATATTTGTGTTTGCCACGCTAACATTCAAAAGTTATTCTCGTTTTAATGAC
CGCCGTTGTCTTGTAGTGCAGCTTGTATAAACAGTAGACAATAAATGGTTTAATGAACCC
| CDD |
Paired_dom (IPR001523) - T[27-154] 1.48556E-80 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[27-153] 60.339 |
| SMART |
Paired_dom (IPR001523) - T[27-151] 2.1E-87 |
| Pfam |
Paired_dom (IPR001523) - T[27-151] 8.0E-71 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[27-95] 4.0E-38 - T[96-154] 1.6E-31 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[29-154] 9.19E-40 - T[193-264] 5.13E-27 |
| PRINTS |
Paired_dom (IPR001523) - T[31-46] 2.1E-37 - T[49-67] 2.1E-37 - T[69-86] 2.1E-37 - T[87-104] 2.1E-37 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[61-77] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[198-258] 21.151 |
| SMART |
Homeobox_dom (IPR001356) - T[200-262] 5.8E-28 |
| CDD |
Homeobox_dom (IPR001356) - T[201-259] 1.74697E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[201-257] 1.5E-22 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[233-256] . |
| ProSiteProfiles |
OAR_dom (IPR003654) - T[605-618] 10.752 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 63.664 % | 385 | 1.54E-127 |
| PAX3_HUMAN | 58.424 % | 389 | 3.15E-129 |
| PAX6_HUMAN | 49.64 % | 260 | 1.58E-80 |