- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C10.196.v2...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'KH2012:KH.C10.196.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.196.v1.A.nonSL3-1
Possible name(s)
C6; C8A; C9
Gene model
Location
KhC10 [735,960 / 743,381]
Amino acid sequence
Length: 563
>KH.C10.196.v1.A.nonSL3-1
AVAMKGIAILSIAVLFSITEARFRIRRRRNAPAPVHCAVSSWSAWSACSVSCAGGERSRS
RRIIRHPAHGGNGCPGLHQKGKCSQHRCPINCEWGEWGAWSSCSPCPPGGRSRSRNITTA
SMFGGQACIGGEFNSDYNCLSEEDCPLFQCPDETFACADELTCIRPNLRCNGDDDCTDNS
DEENCGENVRSPCGGKSYKEIPTIDIAGAGYDITIGEEIGTILDNQRYNGRCYTVRSGEH
DKKFRVPANIQTFRFQVSADTSFVITSYDSSKEFLDSQQGDVTRKLEPKSSFTYIYSVSG
GATNTKNQKTLRVVRQGASSDAKYFKIHSNIVLSQFRTLRRNFLLSYQFRQRLLELPDGY
DHIKYAEVLADFGTHFYSSGTLGARYEFIYRYSKKELEESGLTHEEQKNCLKTEATFRLL
KFTFGGDTNKCSTNVMSRRYNGSFTLAAKEVISNVVGGYSDKAASLAFFANNVPNSNDYD
AWVETIKHNPAVIDFSLSPISSVVSDQVKRQNLERALFDYLSKYTPSKCKGVCANGGRAV
VVDGGMTCKCLCSAGHGGSSCER
Nucleotide sequence
Length: 2,071
>KH2012:KH.C10.196.v1.A.nonSL3-1
AGAAGCTAAGCAGTTGCCATGAAGGGGATAGCGATTTTGAGCATTGCAGTTTTGTTTAGT
ATTACTGAAGCACGGTTTCGTATAAGACGAAGGCGTAATGCCCCAGCACCTGTGCACTGC
GCGGTTTCAAGTTGGAGCGCCTGGTCAGCTTGTTCGGTTAGTTGCGCTGGCGGTGAGAGG
TCAAGGTCAAGGAGGATAATAAGACACCCCGCACATGGTGGAAATGGATGTCCAGGTCTC
CACCAGAAAGGCAAGTGCAGCCAACATAGATGTCCCATTAACTGTGAGTGGGGGGAATGG
GGAGCTTGGTCAAGCTGTTCGCCCTGCCCACCTGGAGGGAGAAGTCGCAGTCGCAACATT
ACAACAGCATCCATGTTTGGTGGACAAGCTTGTATAGGAGGAGAGTTTAATTCAGATTAC
AATTGCCTCAGCGAGGAAGATTGCCCGCTGTTTCAATGTCCTGATGAAACGTTTGCATGC
GCAGATGAACTAACCTGTATACGGCCCAACCTGCGTTGCAACGGAGACGACGATTGCACA
GATAACTCGGACGAAGAAAACTGTGGAGAAAACGTCAGGTCGCCATGCGGTGGAAAAAGC
TATAAAGAAATACCAACTATCGATATAGCTGGCGCTGGATACGACATAACGATTGGTGAA
GAGATTGGGACAATATTGGACAACCAGCGATACAACGGTCGTTGTTACACTGTGAGGAGT
GGTGAACATGATAAGAAGTTTAGAGTTCCTGCCAATATTCAAACGTTTCGGTTCCAAGTT
AGTGCAGATACCTCATTCGTGATTACGTCATACGACAGCTCAAAAGAATTCTTGGATTCT
CAGCAGGGTGACGTTACGCGTAAACTTGAACCCAAGTCTTCATTCACTTATATATACAGT
GTTAGTGGTGGAGCAACAAATACAAAAAATCAGAAAACGCTTCGTGTTGTTCGACAGGGG
GCATCGAGCGATGCAAAGTATTTTAAAATCCACAGCAATATTGTGTTGTCGCAGTTCAGA
ACTCTTCGACGAAACTTCCTTCTTTCGTATCAATTCCGCCAACGATTACTCGAGCTACCA
GACGGATACGATCATATCAAGTATGCTGAAGTACTGGCAGATTTTGGGACCCATTTCTAT
TCTTCTGGAACGTTGGGAGCAAGATATGAATTTATTTATCGATATTCTAAAAAAGAGTTG
GAAGAATCAGGTTTAACACACGAAGAACAAAAGAATTGTCTAAAAACTGAGGCGACTTTC
CGTCTATTGAAGTTTACGTTTGGCGGTGACACCAATAAGTGCTCAACAAATGTAATGTCG
CGAAGATACAACGGTAGCTTCACTCTGGCGGCAAAAGAAGTTATTTCAAACGTAGTAGGC
GGGTATTCAGATAAAGCAGCTTCACTTGCTTTCTTTGCGAATAATGTTCCAAACAGTAAC
GATTATGACGCATGGGTGGAAACAATCAAACACAATCCTGCTGTCATAGATTTTTCTTTA
AGCCCTATTTCATCCGTTGTTTCGGACCAAGTGAAACGGCAGAACTTGGAACGTGCCTTG
TTTGACTATTTGTCCAAGTACACGCCATCCAAATGTAAAGGAGTATGCGCAAATGGTGGT
CGAGCTGTGGTAGTGGACGGTGGGATGACTTGCAAGTGTTTGTGTTCTGCTGGCCATGGT
GGTAGTTCATGCGAGAGATGAAAGAATTGTCATCTTACTTTTTGACAATGAATACACAAT
GGCTCAAAAACTTATGATTTGTTAAAGTGTAATCCATTTAAATATTCCTAAATGATATTG
CGGTTTCTGGTAGCCAACTTCAAGAGACCAACCTACTACAGGTGGCAACAAACGACACCC
TATAATAAGGTTGTATATACGCCACTATTACTCTATAACCTCTTACCGATATAAATTACT
CGAATACCGGCTGTAGGCCTACTGTGATATGTACGCACTGATTCTTTCATTTGATATACC
AAAGCCATTGCTTTTTGCGTTTTCATATTTCTGCTTCTATAGCTTTGTACAATATATTGC
AACTCTGACTACAATAACCGATACATTACAC
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[33-88] 2.22E-10 - T[90-131] 7.72E-7 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[35-83] 8.7E-14 - T[90-140] 5.3E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[36-89] 11.847 - T[91-151] 9.847 |
| SMART |
TSP1_rpt (IPR000884) - T[39-89] 1.8E-11 - T[94-151] 3.4E-4 |
| Pfam |
TSP1_rpt (IPR000884) - T[40-88] 1.6E-8 - T[95-130] 0.0064 |
| PRINTS |
MAC_perforin (IPR001862) - T[112-128] 1.6E-22 - T[156-176] 1.6E-22 - T[354-376] 1.6E-22 - T[481-500] 1.6E-22 - T[530-550] 1.6E-22 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[143-185] 1.96E-8 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[149-187] 2.5E-9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[149-185] 3.5E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[149-186] 12.55 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[150-185] 8.62205E-10 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[163-185] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[189-535] 28.704 |
| Pfam |
MACPF (IPR020864) - T[317-520] 8.5E-35 |
| SMART |
MACPF (IPR020864) - T[323-522] 3.8E-31 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[365-376] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[525-562] 8.545 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[550-561] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 32.963 % | 292 | 1.34E-88 |
| CO8A_HUMAN | 28.88 % | 204 | 1.28E-58 |
| CO9_HUMAN | 26.857 % | 191 | 6.98E-54 |