Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 557

>KH.C10.196.v1.R.ND1-1
IAILSIAVLFSITEARFRIRRRRNAPAPVHCAVSSWSAWSACSVSCAGGERSRSRRIIRH
PAHGGNGCPGLHQKGKCSQHRCPINCEWGEWGAWSSCSPCPPGGRSRSRNITTASMFGGQ
ACIGGEFNSDYNCLSEEDCPLFQCPDETFACADELTCIRPNLRCNGDDDCTDNSDEENCG
ENVRSPCGGKSYKEIPTIDIAGAGYDITIGEEIGTILDNQRYNGRCYTVRSGEHDKKFRV
PANIQTFRFQVSADTSFVITSYDSSKEFLDSQQGDVTRKLEPKSSFTYIYSVSGGATNTK
NQKTLRVVRQGASSDAKYFKIHSNIVLSQFRTLRRNFLLSYQFRQRLLELPDGYDHIKYA
EVLADFGTHFYSSGTLGARYEFIYRYSKKELEESGLTHEEQKNCLKTEATFRLLKFTFGG
DTNKCSTNVMSRRYNGSFTLAAKEVISNVVGGYSDKAASLAFFANNVPNSNDYDAWVETI
KHNPAVIDFSLSPISSVVSDQVKRQNLERALFDYLSKYTPSKCKGVCANGGRAVVVDGGM
TCKCLCSAGHGGSSCER

Nucleotide sequence

Length: 2,044

>KH2012:KH.C10.196.v1.R.ND1-1
ATAGCGATTTTGAGCATTGCAGTTTTGTTTAGTATTACTGAAGCACGGTTTCGTATAAGA
CGAAGGCGTAATGCCCCAGCACCTGTGCACTGCGCGGTTTCAAGTTGGAGCGCCTGGTCA
GCTTGTTCGGTTAGTTGCGCTGGCGGTGAGAGGTCAAGGTCAAGGAGGATAATAAGACAC
CCCGCACATGGTGGAAATGGATGTCCAGGTCTCCACCAGAAAGGCAAGTGCAGCCAACAT
AGATGTCCCATTAACTGTGAGTGGGGGGAATGGGGAGCTTGGTCAAGCTGTTCGCCCTGC
CCACCTGGAGGGAGAAGTCGCAGTCGCAACATTACAACAGCATCCATGTTTGGTGGACAA
GCTTGTATAGGAGGAGAGTTTAATTCAGATTACAATTGCCTCAGCGAGGAAGATTGCCCG
CTGTTTCAATGTCCTGATGAAACGTTTGCATGCGCAGATGAACTAACCTGTATACGGCCC
AACCTGCGTTGCAACGGAGACGACGATTGCACAGATAACTCGGACGAAGAAAACTGTGGA
GAAAACGTCAGGTCGCCATGCGGTGGAAAAAGCTATAAAGAAATACCAACTATCGATATA
GCTGGCGCTGGATACGACATAACGATTGGTGAAGAGATTGGGACAATATTGGACAACCAG
CGATACAACGGTCGTTGTTACACTGTGAGGAGTGGTGAACATGATAAGAAGTTTAGAGTT
CCTGCCAATATTCAAACGTTTCGGTTCCAAGTTAGTGCAGATACCTCATTCGTGATTACG
TCATACGACAGCTCAAAAGAATTCTTGGATTCTCAGCAGGGTGACGTTACGCGTAAACTT
GAACCCAAGTCTTCATTCACTTATATATACAGTGTTAGTGGTGGAGCAACAAATACAAAA
AATCAGAAAACGCTTCGTGTTGTTCGACAGGGGGCATCGAGCGATGCAAAGTATTTTAAA
ATCCACAGCAATATTGTGTTGTCGCAGTTCAGAACTCTTCGACGAAACTTCCTTCTTTCG
TATCAATTCCGCCAACGATTACTCGAGCTACCAGACGGATACGATCATATCAAGTATGCT
GAAGTACTGGCAGATTTTGGGACCCATTTCTATTCTTCTGGAACGTTGGGAGCAAGATAT
GAATTTATTTATCGATATTCTAAAAAAGAGTTGGAAGAATCAGGTTTAACACACGAAGAA
CAAAAGAATTGTCTAAAAACTGAGGCGACTTTCCGTCTATTGAAGTTTACGTTTGGCGGT
GACACCAATAAGTGCTCAACAAATGTAATGTCGCGAAGATACAACGGTAGCTTCACTCTG
GCGGCAAAAGAAGTTATTTCAAACGTAGTAGGCGGGTATTCAGATAAAGCAGCTTCACTT
GCTTTCTTTGCGAATAATGTTCCAAACAGTAACGATTATGACGCATGGGTGGAAACAATC
AAACACAATCCTGCTGTCATAGATTTTTCTTTAAGCCCTATTTCATCCGTTGTTTCGGAC
CAAGTGAAACGGCAGAACTTGGAACGTGCCTTGTTTGACTATTTGTCCAAGTACACGCCA
TCCAAATGTAAAGGAGTATGCGCAAATGGTGGTCGAGCTGTGGTAGTGGACGGTGGGATG
ACTTGCAAGTGTTTGTGTTCTGCTGGCCATGGTGGTAGTTCATGCGAGAGATGAAAGAAT
TGTCATCTTACTTTTTGACAATGAATACACAATGGCTCAAAAACTTATGATTTGTTAAAG
TGTAATCCATTTAAATATTCCTAAATGATATTGCGGTTTCTGGTAGCCAACTTCAAGAGA
CCAACCTACTACAGGTGGCAACAAACGACACCCTATAATAAGGTTGTATATACGCCACTA
TTACTCTATAACCTCTTACCGATATAAATTACTCGAATACCGGCTGTAGGCCTACTGTGA
TATGTACGCACTGATTCTTTCATTTGATATACCAAAGCCATTGCTTTTTGCGTTTTCATA
TTTCTGCTTCTATAGCTTTGTACAATATATTGCAACTCTGACTACAATAACCGATACATT
ACAC

InterProScan

SUPERFAMILY	TSP1_rpt_sf (IPR036383) - T[27-82] 2.22E-10 - T[84-125] 7.59E-7
Gene3D	TSP1_rpt_sf (IPR036383) - T[29-77] 8.6E-14 - T[84-134] 5.2E-8
ProSiteProfiles	TSP1_rpt (IPR000884) - T[30-83] 11.847 - T[85-145] 9.847
SMART	TSP1_rpt (IPR000884) - T[33-83] 1.8E-11 - T[88-145] 3.4E-4
Pfam	TSP1_rpt (IPR000884) - T[34-82] 1.6E-8 - T[89-124] 0.0063
PRINTS	MAC_perforin (IPR001862) - T[106-122] 1.5E-22 - T[150-170] 1.5E-22 - T[348-370] 1.5E-22 - T[475-494] 1.5E-22 - T[524-544] 1.5E-22
SUPERFAMILY	LDL_receptor-like_sf (IPR036055) - T[137-179] 1.96E-8
ProSiteProfiles	LDrepeatLR_classA_rpt (IPR002172) - T[143-180] 12.55
SMART	LDrepeatLR_classA_rpt (IPR002172) - T[143-181] 2.5E-9
Pfam	LDrepeatLR_classA_rpt (IPR002172) - T[143-179] 3.4E-8
CDD	LDrepeatLR_classA_rpt (IPR002172) - T[144-179] 9.97714E-10
ProSitePatterns	LDLR_class-A_CS (IPR023415) - T[157-179] .
ProSiteProfiles	MACPF (IPR020864) - T[183-529] 28.704
Pfam	MACPF (IPR020864) - T[311-514] 8.4E-35
SMART	MACPF (IPR020864) - T[317-516] 3.8E-31
ProSitePatterns	MACPF_CS (IPR020863) - T[359-370] .
ProSiteProfiles	EGF-like_dom (IPR000742) - T[519-556] 8.545
ProSitePatterns	EGF-like_CS (IPR013032) - T[544-555] .