- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C10.196.v2...'
Transcript Model
Transcript Id
KH2012:KH.C10.196.v2.A.ND2-1
Possible name(s)
C6; C8A; C9
Gene model
Location
KhC10 [735,960 / 741,922]
Amino acid sequence
Length: 538
>KH.C10.196.v2.A.ND2-1
RKNAPAAVHCAVSSWSAWSACSVSCAGGERSRSRRIIRHPAHGGNGCPGLHQKGKCSQHR
CPINCEWGEWGAWSSCSPCPPGGRSRSRNITTASMFGGQACIGGEFNSDYNCLSEEDCPL
FQCPDETFACADELTCIRPNLRCNGDDDCTDNSDEENCGENVRSPCGGKSYKEIPTIDIA
GAGYDITIGEEIGTILDNQRYNGRCYTVRSGEHDKKFRVPANIQTFRFQVSADTSFVITS
YDSSKEFLDSQQGDVTRKLEPKSSFTYGDIYSVSGGATNTKNQKTLRVVRQGASSDAKYF
KIHSNIVLSQFRTLRRNFLLSYQFRQRLLELPDGYDHIKYAEVLADFGTHFYSSGTLGAR
YEFIYRYSKKELEESGLTHEEQKNCLKTEATFRLLKFTFGGDTNKCSTNVMSRRYNGSFT
LAAKEVISNVVGGYSDKAASLAFFANNVPNSNDYDAWVETIKHNPAVIDFSLSPISSVVS
DQVKRQNLERALFDYLSKYTPSKCKGVCANGGRAVVVDGGMTCKCLCSAGHGGSSCER
Nucleotide sequence
Length: 1,988
>KH2012:KH.C10.196.v2.A.ND2-1
GAGAAAGAATGCTCCGGCGGCAGTGCATTGCGCGGTTTCAAGTTGGAGCGCCTGGTCAGC
TTGTTCGGTTAGTTGCGCTGGCGGTGAGAGGTCAAGGTCAAGGAGGATAATAAGACACCC
CGCACATGGTGGAAATGGATGTCCAGGTCTCCACCAGAAAGGCAAGTGCAGCCAACATAG
ATGTCCCATTAACTGTGAGTGGGGGGAATGGGGAGCTTGGTCAAGCTGTTCGCCCTGCCC
ACCTGGAGGGAGAAGTCGCAGTCGCAACATTACAACAGCATCCATGTTTGGTGGACAAGC
TTGTATAGGAGGAGAGTTTAATTCAGATTACAATTGCCTCAGCGAGGAAGATTGCCCGCT
GTTTCAATGTCCTGATGAAACGTTTGCATGCGCAGATGAACTAACCTGTATACGGCCCAA
CCTGCGTTGCAACGGAGACGACGATTGCACAGATAACTCGGACGAAGAAAACTGTGGAGA
AAACGTCAGGTCGCCATGCGGTGGAAAAAGCTATAAAGAAATACCAACTATCGATATAGC
TGGCGCTGGATACGACATAACGATTGGTGAAGAGATTGGGACAATATTGGACAACCAGCG
ATACAACGGTCGTTGTTACACTGTGAGGAGTGGTGAACATGATAAGAAGTTTAGAGTTCC
TGCCAATATTCAAACGTTTCGGTTCCAAGTTAGTGCAGATACCTCATTCGTGATTACGTC
ATACGACAGCTCAAAAGAATTCTTGGATTCTCAGCAGGGTGACGTTACGCGTAAACTTGA
ACCCAAGTCTTCATTCACTTACGGAGATATATACAGTGTTAGTGGTGGAGCAACAAATAC
AAAAAATCAGAAAACGCTTCGTGTTGTTCGACAGGGGGCATCGAGCGATGCAAAGTATTT
TAAAATCCACAGCAATATTGTGTTGTCGCAGTTCAGAACTCTTCGACGAAACTTCCTTCT
TTCGTATCAATTCCGCCAACGATTACTCGAGCTACCAGACGGATACGATCATATCAAGTA
TGCTGAAGTACTGGCAGATTTTGGGACCCATTTCTATTCTTCTGGAACGTTGGGAGCAAG
ATATGAATTTATTTATCGATATTCTAAAAAAGAGTTGGAAGAATCAGGTTTAACACACGA
AGAACAAAAGAATTGTCTAAAAACTGAGGCGACTTTCCGTCTATTGAAGTTTACGTTTGG
CGGTGACACCAATAAGTGCTCAACAAATGTAATGTCGCGAAGATACAACGGTAGCTTCAC
TCTGGCGGCAAAAGAAGTTATTTCAAACGTAGTAGGCGGGTATTCAGATAAAGCAGCTTC
ACTTGCTTTCTTTGCGAATAATGTTCCAAACAGTAACGATTATGACGCATGGGTGGAAAC
AATCAAACACAATCCTGCTGTCATAGATTTTTCTTTAAGCCCTATTTCATCCGTTGTTTC
GGACCAAGTGAAACGGCAGAACTTGGAACGTGCCTTGTTTGACTATTTGTCCAAGTACAC
GCCATCCAAATGTAAAGGAGTATGCGCAAATGGTGGTCGAGCTGTGGTAGTGGACGGTGG
GATGACTTGCAAGTGTTTGTGTTCTGCTGGCCATGGTGGTAGTTCATGCGAGAGATGAAA
GAATTGTCATCTTACTTTTTGACAATGAATACACAATGGCTCAAAAACTTATGATTTGTT
AAAGTGTAATCCATTTAAATATTCCTAAATGATATTGCGGTTTCTGGTAGCCAACTTCAA
GAGACCAACCTACTACAGGTGGCAACAAACGACACCCTATAATAAGGTTGTATATACGCC
ACTATTACTCTATAACCTCTTACCGATATAAATTACTCGAATACCGGCTGTAGGCCTACT
GTGATATGTACGCACTGATTCTTTCATTTGATATACCAAAGCCATTGCTTTTTGCGTTTT
CATATTTCTGCTTCTATAGCTTTGTACAATATATTGCAACTCTGACTACAATAACCGATA
CATTACAC
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[8-52] 2.88E-10 - T[63-104] 7.32E-7 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[8-56] 8.2E-14 - T[63-113] 5.0E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[9-62] 11.847 - T[64-124] 9.847 |
| SMART |
TSP1_rpt (IPR000884) - T[12-62] 1.8E-11 - T[67-124] 3.4E-4 |
| Pfam |
TSP1_rpt (IPR000884) - T[13-61] 1.6E-8 - T[68-103] 0.006 |
| PRINTS |
MAC_perforin (IPR001862) - T[85-101] 1.3E-22 - T[129-149] 1.3E-22 - T[329-351] 1.3E-22 - T[456-475] 1.3E-22 - T[505-525] 1.3E-22 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[116-158] 1.96E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[122-159] 12.55 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[122-160] 2.5E-9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[122-158] 3.3E-8 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[123-158] 1.46849E-9 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[136-158] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[162-510] 28.627 |
| Pfam |
MACPF (IPR020864) - T[291-495] 1.5E-34 |
| SMART |
MACPF (IPR020864) - T[298-497] 3.8E-31 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[340-351] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[500-537] 8.545 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[525-536] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 32.907 % | 296 | 2.42E-90 |
| CO8A_HUMAN | 28.767 % | 204 | 1.07E-58 |
| CO9_HUMAN | 27.048 % | 189 | 1.62E-53 |