- Clone 'cima84458' >
- Transcript 'KH2012:KH.C10.264.v2...'
Transcript Model
Transcript Id
KH2012:KH.C10.264.v2.A.SL1-1
Possible name(s)
HNRNPDL; MSI1; MSI2
Gene model
Location
KhC10 [4,429,783 / 4,445,969]
Amino acid sequence
Length: 429
>KH.C10.264.v2.A.SL1-1
SLSSLVQVNYCGLVSMTDIPESPMLATVGPDTADPRKVFVGGLSWQTSSEGLKEYFSRFG
EVSDAMVMRDPITKRSRGFGFVSYAEPKDVDKMLEQGQHVLDQKPIDPKIAVPRKDQTRM
VTRTKKIFVGGLSANTVVDDLKNYFGTYGKVEDAMLMFDKQTNRHRGFGFVTFDNEEPVE
KVCEIHFHEINNKMVECKKAQPKEVMLPTLARGTARRTYVDPSSAYVLAAGIPGLAYGRP
AAAAATAYAYPSAYAAYPGALSFVDPAATATGTGAFYHPSFALAPSPAPAQALYTPDATT
AMAGLARVGVAPVPGRLEALATPTAGNLTQPASVADIKRDFVASVLSSYAHGAAAPAFAS
YHPSPSPGARAFANGTTAGEILTSADPALAQHYIGQNASPQPGLTATIPGGLAGHFASQG
PLIAGLTYP
Nucleotide sequence
Length: 2,820
>KH2012:KH.C10.264.v2.A.SL1-1
CTATTGCAAGTAGTTTATAGTCACTTAGTAGCTTAGTTCAAGTCAATTACTGTGGTTTAG
TTAGTATGACAGATATTCCCGAAAGCCCAATGCTGGCAACAGTTGGACCGGACACAGCGG
ACCCAAGAAAGGTCTTCGTTGGGGGTCTTAGCTGGCAAACCAGCTCAGAAGGCTTGAAGG
AATATTTTAGTCGGTTTGGGGAAGTATCTGACGCCATGGTTATGAGAGACCCTATTACTA
AACGTTCCAGGGGCTTTGGATTTGTATCTTATGCTGAACCGAAAGACGTCGATAAGATGT
TGGAACAAGGACAGCATGTTCTAGATCAAAAGCCCATTGACCCGAAAATTGCTGTGCCAC
GGAAAGACCAGACTCGGATGGTGACAAGGACGAAAAAAATATTTGTTGGTGGATTGTCCG
CCAACACAGTGGTTGATGATCTCAAAAACTACTTCGGAACATACGGCAAGGTTGAAGATG
CAATGCTAATGTTCGACAAACAGACGAACCGCCACAGAGGGTTTGGCTTCGTAACTTTTG
ACAACGAAGAGCCGGTCGAAAAGGTTTGCGAAATTCACTTCCACGAAATCAACAACAAAA
TGGTCGAGTGCAAAAAAGCACAACCTAAAGAAGTAATGTTGCCAACTTTGGCGAGAGGAA
CAGCAAGGAGGACTTACGTTGACCCATCATCGGCGTATGTGTTAGCGGCAGGCATTCCAG
GTTTGGCATACGGACGACCAGCAGCGGCAGCAGCCACAGCGTATGCTTACCCATCTGCAT
ATGCGGCTTATCCAGGAGCTCTGAGTTTCGTGGACCCAGCGGCGACCGCTACGGGCACTG
GGGCTTTTTACCACCCCAGTTTTGCCCTAGCCCCATCCCCTGCTCCTGCCCAAGCGCTCT
ATACCCCCGATGCTACAACAGCGATGGCAGGGCTTGCCAGAGTCGGTGTGGCGCCAGTTC
CGGGGCGTCTGGAGGCCCTGGCCACCCCTACAGCAGGCAACTTAACACAGCCGGCCTCAG
TAGCTGATATAAAACGAGACTTTGTTGCATCAGTACTAAGTAGCTACGCCCATGGAGCTG
CAGCTCCTGCCTTTGCCAGCTACCATCCTTCGCCCTCTCCTGGTGCTAGGGCGTTCGCTA
ACGGAACAACAGCAGGCGAAATATTAACCTCCGCTGACCCAGCGCTAGCTCAACACTACA
TCGGGCAGAACGCATCTCCTCAGCCGGGTTTGACCGCCACGATTCCCGGGGGACTGGCCG
GTCATTTCGCCTCGCAAGGACCACTGATAGCTGGCCTCACGTACCCTTAATCACGTGTTC
GTCTGAAAGCTGATTGGATGTGGGTCTGTTACGTCATAGTTCGGTGGTTTTCAAAGCACA
AATTGGTTGCTTTTATATCCTGATTGTAAATATTGTTTTTCTTATACCTAAGACGTATAA
CACGCCTGTATTCATGTGTTTGCCACCAGCGCTCGGTTCACAAGGACCCGTTTAAAGCGC
GCGGCAGCTTCACGGTGCCATGTTCGAACCAGTGTGAAAATTATTGCATCGCTCGTTCAA
GTTTTGAGTTTTCTGCGTTTTTTCCGTTTTTTTCTATCTTTTTTTTCAGCGAAATTTCCC
GAAGTTGCACGCGTATCTCTCTCAACTCTATCCTCCAATCGCAGCCGCTGGTTTGGCTCG
CCACTGTGACGTCACAAATGCAATAATAAACGAATAGAAACTTCACAAACGTAGAAATAG
CTGGTAGAAATAACAGTGTACACATGTGACGTCAGTAGATAGGAACAAATCCTTTGCGAT
AATCTTTTGCGCCACCCAGCGTACGAATAACGTAGTATATGATTTCTATGGTAAACAGGG
GTGGGTGGCGGGTGAATTTGTAATAATTACACACGACTTTTTTTTTCTTATCCTTCCTCG
AGCCTGACGTTCAAATGCATACGTGGCGATGCTAATTCTCCTGCGTAGGTGTGACGTAGT
CCTAGCGGTGACGTCATGATGACGTAGAACGAACCCTGGCATCTTACCGTTAATAGTGTG
GAATAGTTCACTGCCTGATAAGAATCAAAACAAAATTTTATTTTCCTTCGACCGCAGGTG
CCTTTATTATCGTCATTGTGATGATCGGAAACCGAAATAGTCCGATCCTTTCCGAAATAT
ATGACGTCGCGTCCGGCTTGTGTAACCCCCGCGTACTAACCAGTAGCGAACGTAGACGCC
TAACATTTTTGCTTCTCTATTGGATTTTACCGAATCCAAATAGTCGGATCGTATTTTTGC
ACGGCTCTGTACATTGTATGCTCGTACTTTAAAAGCAAAACCAAACCTTTGGCATTGTAA
TAGTGGTGTGGCTAATCAAAGCATCACTGTGTTAACCATTTCTTCACATACAGCCTATTA
TCGATACTTTTGTTCGGTGTAACCCGCACAAAACACTCGTATTCTCACAACCACGGTCTA
TATGCTCTACCCAACGTACTATACGTACCCCTTGTACATACAACCGTTTATATATAACTC
GTTTTCTGATTTTACCTTTTCTCCGCTTACCTGGTCAAATTAAACAATCCTTACTCGCTA
TTAGATACCCGTCTCGTGACGTCACGTTCGCGTGACGTTATGCTGACGTGACGTCACACG
GGTCGTTTGTTAGATTTCTCTAGAACGGTAGAGTAGCACTCAGACAGTGCAATTGGTTTG
TTATTTTGGGCGGTGTGTATCCGACGACGTTTTTTTTTCTTTTTCTCGCATTCGGTTGTT
CCCTGTTGTATATATGAGTTTTTCAAGTTCTGTTGGTTTAAAAATAAACCAAATACCCGG
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[34-120] 3.63E-24 - T[122-218] 3.36E-25 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[34-116] 5.7E-25 - T[117-203] 4.4E-23 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[36-113] 17.131 - T[125-202] 16.807 |
| SMART |
RRM_dom (IPR000504) - T[37-109] 1.8E-22 - T[126-198] 1.3E-22 |
| Pfam |
RRM_dom (IPR000504) - T[38-97] 4.6E-15 - T[127-193] 4.3E-14 |
| CDD |
MSI_RRM2 (IPR034126) - T[126-199] 1.52902E-53 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HNRDL_HUMAN | 49.143 % | 172 | 2.74E-49 |
| MSI2H_HUMAN | 56.463 % | 305 | 1.46E-101 |
| MSI1H_HUMAN | 62.449 % | 296 | 1.29E-97 |