- Transcript 'KH2012:KH.C10.583.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.583.v1.A.SL3-1
Possible name(s)
ABCD2; ABCD3; ABCD4
Gene model
Location
KhC10 [2,578,084 / 2,585,245]
Amino acid sequence
Length: 642
>KH.C10.583.v1.A.SL3-1
NRASKGLRCCSKMENEVPRLGLVFFRRLWKILGIIFQRWNSRATVIFVIFTVLSLLLQFV
IYAAGLVPSKYFTVLGAKDAETFPQLAVYSILIIVLNALMKSCLTYISKILYLTWRQTLC
GKLHLDYFKNMNYYKLNVLDNKLDNVDQRLTRDVEQFSREWSLMCGKLVVVPFTLVYYSY
QCFVSTTWIGPVTIYIYFLVGTFINRIIMAPIVRLQVEQEVKEGDFRFQHLQVRVNAESM
AFHRAGKTEQTKSNEKLRTLIKTQMSLFNWSFWLNSAVNIFDYVGGILSYLVIAIPIFAG
NYDDLAPEEISALISKNSFVCIYLIYSFSQLIDMSSTVGDMAAHTHRLGQLIESLDVENK
DQPPEEEDSSFTYENESYSDEENILKDQSTGEEEFRVVEAMIVGDKTGDKSFASKQPERD
GVFFKLQSVSVTPPDKTATLLQSLSISLSDGKNVLITGPTGAGKTSLLRVLAGLWPVETG
SINRFLEFGKEGVMFLPQKPYLTDGTLQDQVMYPIYSLPNGINEEENRNHIYSIIEEVGL
SDLLKGNSGSVDRKELNWSDKLSPGEAQCLAFARLFYHNPKFAVMDEPASGLDPNMADNL
YLSCMKRKITYLTVGHGSTLQKHHDEELRIYGNGDWSIITLL
Nucleotide sequence
Length: 2,304
>KH2012:KH.C10.583.v1.A.SL3-1
GAAATAGGGCAAGCAAAGGTTTACGGTGCTGCAGTAAGATGGAAAACGAAGTCCCAAGAC
TTGGACTTGTATTTTTTCGCCGACTTTGGAAAATATTAGGCATAATTTTCCAGCGTTGGA
ATTCCCGTGCAACTGTGATATTCGTCATCTTTACTGTGCTATCTCTGCTTTTGCAATTCG
TGATCTATGCTGCTGGTCTTGTTCCTTCCAAATATTTTACAGTTCTTGGAGCAAAAGATG
CTGAAACTTTTCCACAGCTTGCTGTTTATTCTATTCTAATAATTGTTCTCAATGCTTTGA
TGAAAAGCTGTCTTACATACATCTCAAAAATCCTATATTTAACCTGGAGACAGACACTGT
GTGGAAAACTTCATCTTGATTATTTTAAAAACATGAATTACTACAAGTTGAATGTACTGG
ATAATAAACTTGATAATGTTGATCAGAGGTTGACCAGAGATGTTGAGCAGTTTTCCCGTG
AATGGAGTTTAATGTGTGGAAAACTAGTTGTTGTTCCATTCACTCTTGTGTATTACTCAT
ACCAGTGTTTTGTGAGCACCACATGGATTGGGCCGGTCACCATATATATCTATTTTCTTG
TTGGAACGTTTATCAATCGGATCATCATGGCTCCTATAGTCAGGCTCCAAGTGGAACAAG
AAGTAAAGGAGGGAGATTTCAGGTTCCAGCACCTCCAAGTGCGTGTGAATGCAGAATCAA
TGGCATTTCACAGAGCTGGCAAAACTGAGCAGACAAAGAGCAACGAAAAACTTCGTACGC
TCATTAAGACACAAATGTCTTTATTTAACTGGTCTTTCTGGCTTAACTCTGCTGTAAACA
TATTTGATTATGTTGGTGGGATCCTTAGTTATCTTGTTATTGCTATACCAATATTTGCCG
GAAATTATGACGACTTGGCTCCGGAAGAAATAAGTGCTCTTATAAGCAAAAACTCCTTTG
TTTGCATCTACCTTATCTACAGCTTCTCTCAATTAATTGACATGTCAAGTACTGTGGGCG
ACATGGCTGCTCATACACACAGACTTGGTCAGTTGATTGAATCCTTGGATGTGGAAAACA
AGGATCAACCTCCAGAAGAAGAAGATTCTTCATTCACATACGAGAATGAATCTTACTCGG
ACGAAGAGAATATTTTAAAAGATCAATCAACTGGAGAAGAAGAATTCAGAGTTGTTGAGG
CAATGATAGTAGGAGATAAAACCGGTGATAAAAGTTTTGCGTCGAAGCAACCAGAGAGAG
ATGGCGTGTTCTTTAAACTGCAAAGTGTTTCGGTCACGCCTCCAGACAAAACTGCAACTC
TATTGCAAAGTCTAAGCATCTCTTTATCTGACGGGAAAAATGTTTTAATAACTGGTCCAA
CCGGTGCTGGAAAAACCTCGCTTTTACGAGTTTTAGCAGGATTATGGCCAGTTGAGACTG
GTTCTATTAACAGGTTCTTGGAATTTGGCAAAGAAGGTGTTATGTTTTTGCCTCAAAAAC
CTTACCTTACGGATGGGACCTTGCAAGACCAGGTAATGTACCCTATCTACAGTCTTCCAA
ATGGTATTAATGAGGAGGAAAATAGAAACCATATTTATTCCATCATTGAAGAAGTTGGCT
TGTCTGATTTGTTAAAAGGCAACAGTGGATCTGTGGACAGAAAAGAATTGAACTGGAGTG
ACAAGCTATCCCCAGGTGAAGCGCAGTGCTTGGCATTTGCAAGATTGTTTTACCACAACC
CAAAGTTTGCAGTAATGGATGAACCAGCAAGTGGTTTGGATCCAAACATGGCAGACAATC
TATATCTGTCGTGTATGAAGCGGAAAATCACTTACTTGACTGTTGGACATGGTTCAACTT
TACAGAAGCACCATGATGAAGAACTGCGCATTTATGGAAATGGGGATTGGTCAATAATCA
CTTTACTTTAGCATCAAAAATGTTTATGATATTATGTGCAATTTAAATTTTAACTTTTTT
TTTAATTTTTGTTATTAAATTTTAGCAACGACATGGTATTGCGAGTAATTTTAAGCTGTG
TGGTGCAGCCATTATGGTACAATTGTACTCCACTGTTTTAAGGTTTACAAGTAGATTAGC
AAGTGTTTCAAAACAGTGATTATTTGACATGTTGCATAAAGTTTCAAAGTAAATACATTT
GTCACGTTTACTATTTGTACTTTACCTTTACTCTACCTTACGAATAATTTAAAGTGACTT
ATATGAGTGCTTCAATTTTATAAATATGTATTGTGTTTTAGCAATTTTGCCTAAATAAAT
TTGTTGCATATTCTAGGCTATAAA
| Gene3D |
ABC1_TM_sf (IPR036640) - T[15-360] 5.0E-9 |
| Pfam |
ABC1_TM_dom (IPR011527) - T[21-298] 1.9E-67 |
| SUPERFAMILY |
ABC1_TM_sf (IPR036640) - T[26-334] 9.68E-17 |
| ProSiteProfiles |
ABC1_TM_dom (IPR011527) - T[48-303] 15.432 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[420-631] 3.66E-31 |
| ProSiteProfiles |
ABC_transporter-like (IPR003439) - T[424-641] 14.539 |
| Pfam |
ABC_transporter-like (IPR003439) - T[441-589] 2.3E-18 |
| SMART |
AAA+_ATPase (IPR003593) - T[450-635] 3.2E-7 |
| ProSitePatterns |
ABC_transporter_CS (IPR017871) - T[562-576] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ABCD4_HUMAN | 44.888 % | 539 | 0 |
| ABCD3_HUMAN | 28.051 % | 214 | 1.14E-60 |
| ABCD2_HUMAN | 24.394 % | 182 | 7.53E-49 |