Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C10.87.v2.B.SL4-1

Possible name(s)

TMED10; TMED4; TMED9

Gene model

KH2012:KH.C10.87

Location

KhC10 [1,798,821 / 1,800,340]

Sequences

Amino acid sequence

Length: 351

>KH.C10.87.v2.B.SL4-1
AVLIFLLFVHCSYAIYFHVGEKEKKCFIEELPEDTMVTGKYKAQLWDKRSNQYLDSTPGM
GMHVEIKDPESKVLLSKSYGSEGAFTFTSHTPGEHQICIHSNSTKWSLFAGGRIRVHLDI
QVGENTNDYSQIAAKDKLTELQLRVRQLLDQVQQIQKEQNYQRYREERFRQTSENTNARV
LWWSLAQSAVLVIAGIWQMRHLKGFFEAKKLXXLLQKAMGRRSLDIHFPHTCEHXICIHS
NSTKWSLFAGGRIRVHLDIQVGENTNDYSQIAAKDKLTELQLRVRQLLDQVQQIQKEQNY
QRYREERFRQTSENTNARVLWWSLAQSAVLVIAGIWQMRHLKGFFEAKKLV

Nucleotide sequence

Length: 1,473

>KH2012:KH.C10.87.v2.B.SL4-1
GGCAGTCTTAATTTTCTTACTTTTTGTTCATTGTTCGTATGCCATATATTTCCATGTTGG
TGAGAAAGAAAAGAAATGTTTCATAGAAGAGCTACCAGAAGACACAATGGTGACTGGAAA
GTACAAAGCGCAACTCTGGGATAAGCGTTCTAATCAATATCTTGATTCAACCCCAGGAAT
GGGTATGCATGTTGAAATAAAAGATCCAGAAAGTAAAGTTTTGCTTTCAAAAAGCTATGG
GTCTGAAGGAGCTTTTACATTCACTTCCCACACACCTGGTGAACATCAAATTTGCATTCA
CTCTAATTCAACTAAATGGTCTTTATTTGCTGGTGGAAGGATTCGCGTTCATCTTGATAT
CCAAGTTGGGGAGAACACCAATGATTACAGTCAGATTGCAGCAAAAGACAAACTGACTGA
ACTTCAACTTCGTGTTCGTCAACTTCTTGATCAAGTTCAACAGATCCAGAAAGAGCAAAA
CTACCAACGGTACAGAGAAGAAAGGTTCAGACAGACAAGTGAAAACACCAATGCCAGAGT
TCTATGGTGGTCACTTGCACAGAGTGCAGTGCTGGTCATTGCTGGTATCTGGCAGATGCG
TCATTTGAAAGGATTTTTTGAAGCAAAAAAGTTGGTNNNNTTGCTTCAAAAAGCTATGGG
TCGAAGGAGCTTGGACATTCACTTCCCACACACCTGTGAACATCANATTTGCATTCACTC
TAATTCAACTAAATGGTCTTTATTTGCTGGTGGAAGGATTCGCGTTCATCTTGATATCCA
AGTTGGGGAGAACACCAATGATTACAGTCAGATTGCAGCAAAAGACAAACTGACTGAACT
TCAACTTCGTGTTCGTCAACTTCTTGATCAAGTTCAACAGATCCAGAAAGAGCAAAACTA
CCAACGGTACAGAGAAGAAAGGTTCAGACAGACAAGTGAAAACACCAATGCCAGAGTTCT
ATGGTGGTCACTTGCACAGAGTGCAGTGCTGGTCATTGCTGGTATCTGGCAGATGCGTCA
TTTGAAAGGATTTTTTGAAGCAAAAAAGTTGGTGTAAACATTTTAATCAAAACTAGGTTG
AATAGCAGGTACAACACTGCTAGACAGTTGGGTTTAAAAAAAATTAGTCATTTGGCTCAT
TTATGCAGTGGATGCAATTTATGAATTTATGCTTTTATGCTTTGTTGATAAACTCAATAA
ATTGGTAGTAGGTTAGTTATGTCCTCTTGATGTTATTTCTTTAATTGGTATGGTTGGGGT
GGGTGGAGGGCATTATACAATTTGTGTCTAAAATAATAGGCCTAATAGTTATTATAGCAG
TATGCTGTTTATTTAAAATAATTTCATCTGTACTGTTTTAACATACCATCTAGTTGTACG
AAGTATTTAAATGGATTTTTTGTTTGACTATAGTAGCTTTTGTGTTTTGTTGCACGAATT
TCAAATTTATAAAAATATATACTTTTACTGCAT

InterProScan

PANTHER	TMP21-related (IPR015720) - T[2-211] 3.6E-186 - T[220-351] 3.6E-186
SMART	GOLD_dom (IPR009038) - T[14-207] 2.6E-76 - T[208-346] 1.9E-28
Pfam	GOLD_dom (IPR009038) - T[14-207] 8.5E-54 - T[229-346] 2.7E-33
ProSiteProfiles	GOLD_dom (IPR009038) - T[24-145] 17.467

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED9_HUMAN	70.616 %	330	3.67E-114
TMED4_HUMAN	73.232 %	332	5.33E-115
TMEDA_HUMAN	33.831 %	110	1.47E-28