Aniseed - Transcript Card

Clone 'cicl024b14' >
Transcript 'KH2012:KH.C10.87.v2....'

Transcript Model

Transcript Id

KH2012:KH.C10.87.v2.B.SL5-1

Possible name(s)

TMED10; TMED4; TMED9

Gene model

KH2012:KH.C10.87

Location

KhC10 [1,798,770 / 1,800,340]

Sequences

Amino acid sequence

Length: 357

>KH.C10.87.v2.B.SL5-1
FAMATRAVLIFLLFVHCSYAIYFHVGEKEKKCFIEELPEDTMVTGKYKAQLWDKRSNQYL
DSTPGMGMHVEIKDPESKVLLSKSYGSEGAFTFTSHTPGEHQICIHSNSTKWSLFAGGRI
RVHLDIQVGENTNDYSQIAAKDKLTELQLRVRQLLDQVQQIQKEQNYQRYREERFRQTSE
NTNARVLWWSLAQSAVLVIAGIWQMRHLKGFFEAKKLXXLLQKAMGRRSLDIHFPHTCEH
XICIHSNSTKWSLFAGGRIRVHLDIQVGENTNDYSQIAAKDKLTELQLRVRQLLDQVQQI
QKEQNYQRYREERFRQTSENTNARVLWWSLAQSAVLVIAGIWQMRHLKGFFEAKKLV

Nucleotide sequence

Length: 1,524

>KH2012:KH.C10.87.v2.B.SL5-1
CATAAGTTATTTTGGATGCTAAACTAATAGTTGATTTGCCATGGCAACAAGGGCAGTCTT
AATTTTCTTACTTTTTGTTCATTGTTCGTATGCCATATATTTCCATGTTGGTGAGAAAGA
AAAGAAATGTTTCATAGAAGAGCTACCAGAAGACACAATGGTGACTGGAAAGTACAAAGC
GCAACTCTGGGATAAGCGTTCTAATCAATATCTTGATTCAACCCCAGGAATGGGTATGCA
TGTTGAAATAAAAGATCCAGAAAGTAAAGTTTTGCTTTCAAAAAGCTATGGGTCTGAAGG
AGCTTTTACATTCACTTCCCACACACCTGGTGAACATCAAATTTGCATTCACTCTAATTC
AACTAAATGGTCTTTATTTGCTGGTGGAAGGATTCGCGTTCATCTTGATATCCAAGTTGG
GGAGAACACCAATGATTACAGTCAGATTGCAGCAAAAGACAAACTGACTGAACTTCAACT
TCGTGTTCGTCAACTTCTTGATCAAGTTCAACAGATCCAGAAAGAGCAAAACTACCAACG
GTACAGAGAAGAAAGGTTCAGACAGACAAGTGAAAACACCAATGCCAGAGTTCTATGGTG
GTCACTTGCACAGAGTGCAGTGCTGGTCATTGCTGGTATCTGGCAGATGCGTCATTTGAA
AGGATTTTTTGAAGCAAAAAAGTTGGTNNNNTTGCTTCAAAAAGCTATGGGTCGAAGGAG
CTTGGACATTCACTTCCCACACACCTGTGAACATCANATTTGCATTCACTCTAATTCAAC
TAAATGGTCTTTATTTGCTGGTGGAAGGATTCGCGTTCATCTTGATATCCAAGTTGGGGA
GAACACCAATGATTACAGTCAGATTGCAGCAAAAGACAAACTGACTGAACTTCAACTTCG
TGTTCGTCAACTTCTTGATCAAGTTCAACAGATCCAGAAAGAGCAAAACTACCAACGGTA
CAGAGAAGAAAGGTTCAGACAGACAAGTGAAAACACCAATGCCAGAGTTCTATGGTGGTC
ACTTGCACAGAGTGCAGTGCTGGTCATTGCTGGTATCTGGCAGATGCGTCATTTGAAAGG
ATTTTTTGAAGCAAAAAAGTTGGTGTAAACATTTTAATCAAAACTAGGTTGAATAGCAGG
TACAACACTGCTAGACAGTTGGGTTTAAAAAAAATTAGTCATTTGGCTCATTTATGCAGT
GGATGCAATTTATGAATTTATGCTTTTATGCTTTGTTGATAAACTCAATAAATTGGTAGT
AGGTTAGTTATGTCCTCTTGATGTTATTTCTTTAATTGGTATGGTTGGGGTGGGTGGAGG
GCATTATACAATTTGTGTCTAAAATAATAGGCCTAATAGTTATTATAGCAGTATGCTGTT
TATTTAAAATAATTTCATCTGTACTGTTTTAACATACCATCTAGTTGTACGAAGTATTTA
AATGGATTTTTTGTTTGACTATAGTAGCTTTTGTGTTTTGTTGCACGAATTTCAAATTTA
TAAAAATATATACTTTTACTGCAT

InterProScan

PANTHER	TMP21-related (IPR015720) - T[2-217] 4.2E-187 - T[226-357] 4.2E-187
Pfam	GOLD_dom (IPR009038) - T[20-213] 8.9E-54 - T[235-352] 2.8E-33
SMART	GOLD_dom (IPR009038) - T[20-213] 2.6E-76 - T[214-352] 1.9E-28
ProSiteProfiles	GOLD_dom (IPR009038) - T[30-151] 17.467

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED9_HUMAN	70.755 %	333	5.9E-115
TMED4_HUMAN	73.232 %	332	5.55E-115
TMEDA_HUMAN	33.831 %	110	1.54E-28