- Transcript 'KH2012:KH.C1.1016.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1016.v1.A.SL3-1
Possible name(s)
NR5A1; NR6A1; RXRG
Gene model
Location
KhC1 [4,692,775 / 4,701,879]
Amino acid sequence
Length: 712
>KH.C1.1016.v1.A.SL3-1
HHCTAYLVICVIDLPRITMSLDLSRHRMEGISGLSLMSPPQRSFINNMMKQDDSPNSEHI
GSYQSNYGMHPFIRGNMGYRGYGSPYAFVPHAGSSPQSPKIRNESNNESERKDDGKEVKS
CLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCTRSKNCVMSRKQRNRCQFCRLLK
CLQMGMNRKAIREDGMPGGRNKSIGPVQISDEEIERILSGKDFEEEAAREEQQQQQQQMN
LEQANNPYASMGHSSYMPLFSPGSGPQYPTNMISSSTGSPPLNNGMRNSSTSSSIPMNAR
SLMAGANSQLGFVPSMPGVHVRENSFYPGLPPYQLPHVNRYSMQQGQQIHDRSPESASEL
TSTTLVEQLVLAEDASFLVSIGPDHGFNDVTISKDQLFSILCKVADEMLYRQIVWIKKLP
FFETISIKDHTTLLSTTWAEIILLAALCVHEDQLFGDLADITSKYLPDNDELSRFTDYEM
EILERVTYLYQKFSHLKIDREEYVIMKVINFLNQDIKGLQEVERVEEINKRYWYACQRYT
ELRAMERNAGRSDASSNAAASGASRFRDLMLCLPEIRYVAGKMLNTDVTKLPLLFKAILH
TCKLQKLQSSQLIGRHQNDAGGTSTPPSPTSSPTQPPRTVRDDDKMAAAASMLDLTSDPS
RLNHEQSVRLHGSGSVGPPSSASTVSPGAHQTSSSPRSSHGRSSRDSAADSS
Nucleotide sequence
Length: 4,056
>KH2012:KH.C1.1016.v1.A.SL3-1
ATTCGCCAATAACGCTGTGTTAACATCATTGTACAGCATACTTAGTAATCTGTGTAATTG
ATCTACCTCGGATCACGATGAGTTTAGACCTCAGTCGGCATAGAATGGAAGGCATAAGCG
GCCTGTCATTAATGTCCCCCCCTCAGCGCTCTTTTATCAACAACATGATGAAGCAAGATG
ACTCGCCTAACAGCGAACATATCGGCTCCTACCAATCAAACTATGGCATGCACCCTTTTA
TAAGGGGCAATATGGGATACCGGGGTTATGGTTCCCCGTATGCTTTCGTGCCGCACGCTG
GTAGTTCGCCACAATCGCCCAAAATTCGCAACGAGTCGAATAATGAATCGGAACGAAAAG
ATGATGGAAAAGAGGTGAAGAGTTGTCTCATCTGCGGAGATCGAGCCACTGGACTTCACT
ACGGCATCATATCATGCGAGGGATGTAAAGGTTTCTTCAAACGCAGCATCTGCAACAAAC
GAGTGTACCGATGCACAAGAAGCAAGAACTGTGTCATGTCAAGAAAACAACGGAACCGTT
GTCAGTTCTGCCGTCTACTCAAATGCCTTCAAATGGGCATGAACCGAAAAGCGATCCGGG
AAGATGGCATGCCCGGTGGAAGGAATAAAAGCATTGGACCAGTTCAGATATCAGATGAGG
AAATCGAACGTATTCTGTCCGGAAAAGACTTTGAAGAGGAAGCTGCTCGAGAGGAGCAAC
AGCAGCAACAACAACAGATGAACCTCGAGCAAGCGAACAACCCATATGCTTCAATGGGCC
ACTCAAGTTACATGCCGCTCTTCTCGCCGGGATCTGGGCCTCAATACCCGACCAACATGA
TCTCATCAAGTACGGGTTCACCGCCACTAAACAACGGTATGCGGAATTCATCAACTTCAT
CCTCAATTCCAATGAACGCTCGATCTTTAATGGCTGGTGCAAACTCACAGCTCGGATTTG
TACCTTCGATGCCAGGCGTGCATGTGAGAGAAAACAGCTTCTACCCAGGATTGCCACCAT
ACCAACTACCCCACGTGAACCGATACTCGATGCAACAGGGTCAGCAGATACATGACCGAT
CTCCTGAATCAGCATCCGAACTTACAAGCACGACATTAGTTGAACAGCTGGTGTTGGCTG
AAGACGCATCGTTTCTTGTCTCTATTGGACCGGATCATGGTTTCAATGACGTCACGATTA
GCAAGGATCAACTCTTCAGTATTCTATGCAAGGTAGCGGATGAAATGCTATATCGTCAGA
TTGTTTGGATCAAGAAGTTGCCCTTTTTTGAAACCATTTCCATTAAAGATCACACAACTC
TGTTGAGTACGACATGGGCCGAGATTATATTACTTGCTGCACTGTGCGTGCATGAAGACC
AGTTGTTTGGCGATCTAGCTGATATTACGTCCAAGTATTTGCCCGACAACGATGAGCTGT
CCAGATTCACTGATTACGAGATGGAAATATTGGAAAGAGTAACCTACCTCTACCAAAAGT
TCTCGCATCTGAAAATAGACAGAGAGGAATATGTTATCATGAAAGTCATCAATTTCTTAA
ACCAAGACATCAAAGGTTTACAAGAAGTAGAACGAGTGGAAGAAATTAACAAGAGATATT
GGTATGCTTGTCAACGGTACACTGAACTCCGTGCTATGGAGAGGAACGCGGGAAGATCAG
ATGCCTCATCCAACGCTGCAGCATCCGGAGCATCGAGATTCCGGGATCTCATGTTATGTC
TTCCAGAGATCAGATACGTGGCAGGGAAGATGCTCAACACTGACGTCACTAAACTTCCTC
TTTTATTTAAGGCTATTCTTCACACATGCAAACTGCAAAAGTTACAATCGAGCCAGTTAA
TTGGACGTCATCAAAATGATGCGGGCGGAACATCCACGCCTCCCTCTCCAACCTCATCAC
CAACTCAACCACCACGCACTGTTCGTGACGACGACAAAATGGCTGCCGCCGCCTCAATGC
TTGATCTCACATCTGACCCTTCGCGTCTCAACCACGAACAGTCTGTTCGTCTCCACGGCA
GTGGATCAGTCGGCCCACCATCATCAGCCTCGACTGTCTCACCCGGCGCCCACCAAACAT
CGAGTTCTCCACGTTCAAGTCACGGCCGCAGCAGTCGCGACAGTGCCGCTGATTCCTCAT
AAACCCAAGCATGCCTCATGCTATGCAAGCAGCAACTCACCGACACAACATATCGCACCC
AAAGCACAGCATGTCAATCTTTCAATGCCTTACTGTGACCTCAAGCAAGAAATCCGGTCT
TCCTGGCATCAAGCTGCTTTGCAGACTACCTTGAACCTCGTGCCTCGCTTTTTACAGAAA
ACAAAAACCCCTTTTTCTGCTTCAGTTTTGTACTAAAGTCGACCAAAGAATTTTTAAATA
TGAATTACTTCATCTCGCCTCTTGACGTATATATGACGTCATAAATCGCCTTGGTACTGT
GCCTATTTCCTTCTGCATCTACGGCGTCTGCGTAAATACTCCTACCAAAAAGTCAACTAC
TTCAGGGATTTTTCATTTGACCATTCCTTTTCCCTCACACGTACTAATGATGCGCCAGTG
TAATTTGCTCGCACCAAACGATCCCTTGTTTATTCGCCGTTTTCTTCAGGAAGCTTATAA
TTTTGACTGTGCCCCTTTCTTTCTTCACGACGCCACCAGGTTACTGCGTCCCAGTGTTGA
CCGAATAGCAATAACCGCCCATGAATATCAATAATATTTCCCCGAAGTTTTCCTTCCGCA
AATGACTGAATTCACCAACCGCTGCACCTCTCGTATTATGAGGTGCCATTTTCAGTGAGC
GACGTTTTTTTGTTAAATTTTCGTTGAAAATGCACTGCTCACCATGCCTATTTTTGCCTG
TATATATCGCATGTACATATACCGGTTTCAATGACGCGTACAATCACGTACCGACGTTCT
CTTTTTTGTGAAGTTTCTAATTTTCTATCCTTACACACCCGATGAATTTATCGGCGAGTG
AATTCCCACGCTTTGTAATGCAGTGTCCGAAACACCCCACTATTGCACTAATAAGAGAAA
TTTTACGCCAGATATATTAAACAATCACCTTTAAACCCCCAATAAAACCAAGTGTGTAAA
TTTTTGTTTTTTTTTCAATATTTTCTTCAGCCGTAAAACCTCAGTTCTTAAATACGCCGC
TGTGAACGCCTTTACTCTTTTGACTTTACGTCACAATCTAACTTTGTTGCGACAACAATT
TCACCAAAGCCAAGTTGTAATGCGTCCGGCACCTCTGTTATATACCCTCGTATCACCCGA
CCGTCAATTGTACGAGCAAACACTTCGTTTTCGTCCTTTACCCGCGTACTTTCCTGAAGT
AACCGTTTGTGTATTTTCAGCAAGCCATTGTATGTTGTCATACCTCGTTATTGCATCATA
AAGCGCATTGTGTTCTCATTTACAGCTAACGCACGACACCCATGAGCACCATCAACTTCC
GTGCACTATTAGCTCAGGTTTATGTTTGGAAAGTATCGCGCTGTTCTTCGTCTTTTCTCC
GTTTTTTTGCGCATAACCAATCAACATTGTCCAAGTTAATTTATCCAATATACCCCAATA
TACCTCAGTAAGCAAATCGCCACCATATCTCCATTTTGCAACCGAATCGAACACAACTAA
ACCAAATTCTCTAAAATCACGTTTTAATTGTCGCGATTTTGTTGCAAAATGGAGACCAAA
AATTTCGGCAAACTTCTACGTTTCTTTTTGTTTGTGTTTATTCAGTAAAGTGTTGCCGCG
TTATACCTCAATCTTGGGCGAGCGTAGTCTTCTTATAGAGCCCGCTATTATGTCGTAACA
ATACCGCATTGTGGTTTTAATCGGAAATACAGTTGTGGTGTGACGTGTGTGTTCTATACC
TGTGTGTGTGTGCTCAAATTCGCAAAGTGTGTACAATATTTATAGGGTAGCGTTGAACCA
CGCACACGTATGATATTAATTATACCTCTCGTCCGTTTATTCCGTTATGTTGAGTGAGAA
TAAAAGAGCGCACACACAATAAATGAATGATTCATT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[110-218] 1.6E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[118-193] 20.178 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[118-189] 4.5E-34 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[120-188] 1.3E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[121-137] 8.6E-17 - T[137-152] 8.6E-17 - T[170-178] 8.6E-17 - T[178-186] 8.6E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[121-147] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[182-192] 8.7E-16 - T[404-425] 8.7E-16 - T[425-441] 8.7E-16 - T[496-511] 8.7E-16 - T[568-585] 8.7E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[191-202] 7.34E-39 - T[341-600] 7.34E-39 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[398-582] 1.1E-14 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[403-580] 8.8E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR6A1_HUMAN | 51.815 % | 479 | 1.98E-163 |
| RXRG_HUMAN | 43.151 % | 123 | 8.79E-30 |
| STF1_HUMAN | 24.473 % | 131 | 1.3E-32 |