- Transcript 'Haaura.CG.MTP2014.S9...' >
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- Transcript 'KH2012:KH.C10.583.v1...' >
- Transcript 'KH2012:KH.C1.1017.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1017.v1.A.SL1-1
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
KhC1 [6,976,160 / 6,996,277]
Amino acid sequence
Length: 1,276
>KH.C1.1017.v1.A.SL1-1
KSLNFFIDYVKMTSVWILIVTSLFVSISALDIPPEVPRPPTITIQPDEVTYAIPRVLIVL
RCAAVAQPDVKSTGGYLWKKDGSTLETVDSPSNDGTGVSIVMSQKDGTITFRGSENLPEE
ELLQYEGVYQCFASNDLGTAMTRSTTLKAAATVFLLPENKIIETQVGAPLQIPCSYNSSD
DKLITWKFEPDTVTLNERISESSDGRLIFSNVEGGDDGLVVYCIIKDRITRRSADGPHHT
FYVDASNPMNDQPPVIVSPAPQTEPQIVLKDDTFRLKCSATGKPTPIVHWEKVNGVWPTD
RYVIEDFGRTVTISNATYDDSSDYRCTASNSAGEVAVDEKVLIHARPFFSTGDNTPRDVI
RYPGGNVTIRCQPEGIPSPSIEWRVNGVPIADTPKMDNREIHPTKIRLYNLQIPDSAVYQ
CIASNLYGSIIKQAYVNVLVSKPLALSNDVVQYEQVVGKSIELKCPVFGSPSPDIKWKKD
GADIAMNDRISLRKNKYLRIHEATFDDAGPYSCLAWNEYGSLLLNTSLSVFERTRIQSAH
PTPYFVKRGDSVTMSVQITTDTGVEPRSVHWYKSNIPVGRGVNHIVDNAEFTDTGSYKVM
VNTTLDHASVHFTLVVQDVPLPPMDFSVEATGATPLDVRFTWQPSDNNFSPIEEYKIEYE
ENNYRPGEWFLLVDSMSPDVIYYDVTLSPGLNYKFRMWARNSIGWSETPSGESMRYTTPD
DAPSVNPVGVSGEGNTPTNMIITWQPVEPVNCNGPGFGYYIKYCPVNDCTNRTEIPVPGS
DVTSYEVNGLPTYTPYNIKVVSYNSIGSAADPADVIGFSGEDSPMSEPTNVMVQTIDDDA
TTVIVTWQKVDADSVRGKVLGYTVSFQPTSGYNDVNQKVGDTNTARVTDLQPNTQYTFSV
AVFNSVSSGPNSLPYDVITPESTPGPPHLLRSVQSSDKTIHLAWSSPRKPNGVITGYVMS
YVCLNDTTERFGPIMLDDTSYVMTHLRPNHLYDITVGARTSKGVGELSNVLMSTMAGEAP
KPATFNVTSGLSNANVTWFSAEGIPASKYFIEYKKSDEDKWSTVGPYASAKTGEAVSLEG
LDPGTPYLIRIVSVNDYDNTTSEYIIVTTSGTGASSAGITGQIWFIVLITIIVFLIILII
IVFVSRRRKGGKYSVADKEGQLVDQESQPNRSEDIGEYNDDDEAKKPLNSPTSVSPLNGK
TTPSDGLPTTTPLRTRGDSVAGDSIDAFGDEEAREFNEDGSFIGQYGALQESSTTTPAAS
PGDVNPAINQPHGDAV
Nucleotide sequence
Length: 4,290
>KH2012:KH.C1.1017.v1.A.SL1-1
AGATTTCCATTTTGTATGACGTCATATTAACACTGAATTTCTGAAAATCTTTAAACTTTT
TTATTGATTACGTCAAGATGACGTCAGTTTGGATATTAATTGTGACGTCACTTTTCGTTA
GCATCTCGGCCCTTGATATACCACCTGAAGTGCCACGCCCACCCACGATCACCATCCAAC
CCGATGAGGTCACATACGCGATTCCACGCGTTTTGATTGTACTTCGATGCGCCGCGGTCG
CCCAACCAGATGTTAAAAGCACAGGAGGATATTTATGGAAGAAAGATGGAAGTACTTTGG
AAACTGTTGATAGTCCTTCCAATGACGGAACTGGCGTTAGCATTGTGATGTCACAAAAAG
ATGGAACCATTACCTTCAGGGGAAGTGAAAATCTGCCGGAAGAAGAACTTCTTCAATATG
AAGGCGTGTACCAATGTTTTGCATCTAATGACCTCGGAACAGCAATGACCAGATCCACAA
CTTTAAAAGCTGCAGCGACCGTATTCCTACTACCGGAAAACAAGATCATAGAAACACAAG
TGGGCGCCCCACTTCAGATACCTTGCAGCTACAACAGCTCCGATGATAAGTTAATCACGT
GGAAGTTTGAACCAGACACCGTTACATTGAACGAAAGAATATCTGAGTCGTCCGATGGAA
GATTGATCTTCTCCAACGTCGAAGGAGGTGACGATGGACTCGTAGTCTACTGTATAATAA
AAGATCGAATTACTAGGAGGTCTGCGGATGGTCCCCACCACACGTTCTACGTCGATGCAT
CAAATCCTATGAACGACCAACCACCAGTGATTGTTTCTCCCGCTCCCCAAACCGAACCGC
AAATCGTGCTCAAAGATGACACCTTTAGACTAAAATGCTCGGCCACGGGAAAACCAACTC
CAATCGTTCACTGGGAAAAGGTAAATGGAGTTTGGCCGACCGATCGTTACGTCATCGAAG
ATTTCGGACGAACCGTTACCATTAGCAACGCGACATATGACGACAGTTCCGATTACAGAT
GCACGGCTAGCAATAGTGCTGGGGAAGTCGCCGTAGATGAAAAAGTATTGATCCACGCGC
GACCTTTCTTCTCCACCGGTGATAATACACCTCGTGACGTCATAAGATATCCAGGTGGCA
ACGTCACAATAAGATGTCAACCTGAGGGGATTCCCTCGCCCTCAATAGAATGGAGGGTCA
ATGGCGTTCCTATTGCAGACACTCCAAAAATGGATAATCGTGAAATCCACCCAACCAAAA
TTCGACTTTACAATCTGCAAATACCAGATTCTGCTGTCTACCAGTGCATTGCATCAAATC
TATATGGGAGCATTATAAAACAAGCATATGTGAATGTGTTAGTTTCAAAGCCACTTGCGC
TTTCCAATGATGTGGTGCAGTATGAACAAGTTGTGGGAAAATCTATTGAACTGAAGTGTC
CTGTATTTGGATCACCCTCTCCTGACATCAAGTGGAAAAAAGATGGGGCCGATATTGCAA
TGAACGACAGAATTTCACTTCGAAAAAATAAATATCTCCGAATACACGAAGCAACTTTTG
ATGATGCTGGTCCATACTCTTGTCTTGCTTGGAACGAATATGGAAGTTTATTATTAAACA
CCTCGTTGTCAGTTTTTGAACGAACCCGGATCCAGTCTGCTCACCCAACTCCTTACTTTG
TAAAACGAGGCGATTCGGTGACCATGTCAGTTCAGATTACCACCGACACGGGAGTTGAGC
CACGTTCAGTACATTGGTATAAATCCAACATTCCTGTTGGTCGAGGTGTCAATCACATTG
TCGACAATGCAGAGTTCACAGATACTGGAAGTTACAAAGTTATGGTCAACACCACACTGG
ACCATGCTTCTGTTCATTTCACATTGGTTGTACAAGATGTCCCATTACCACCAATGGATT
TCTCTGTAGAAGCTACAGGTGCAACTCCCTTAGATGTAAGATTTACATGGCAACCATCTG
ATAATAACTTTTCTCCAATAGAAGAATATAAAATTGAGTATGAAGAAAATAATTACAGAC
CAGGAGAATGGTTCTTATTGGTTGATTCGATGTCACCTGATGTAATCTATTATGATGTCA
CACTATCACCGGGTTTGAATTACAAATTCAGAATGTGGGCTCGTAATTCTATTGGCTGGA
GTGAGACACCGAGTGGAGAAAGCATGCGGTATACCACACCGGACGATGCTCCCAGTGTAA
ACCCAGTAGGAGTATCAGGGGAGGGGAACACCCCAACTAACATGATTATCACCTGGCAAC
CCGTGGAACCAGTGAACTGTAACGGACCAGGTTTTGGTTACTATATCAAGTACTGCCCAG
TAAATGACTGCACGAACAGAACAGAAATTCCTGTTCCAGGCAGTGACGTAACATCATATG
AAGTGAATGGTCTTCCAACATATACTCCATACAATATCAAGGTTGTCAGCTATAATTCTA
TTGGATCTGCAGCAGACCCAGCTGATGTCATTGGGTTTTCTGGAGAAGATTCTCCCATGT
CTGAACCAACTAATGTCATGGTCCAAACAATTGATGATGATGCAACAACAGTCATTGTGA
CATGGCAAAAGGTTGATGCTGACTCAGTACGTGGTAAAGTGTTAGGATACACTGTGTCTT
TCCAACCTACTTCTGGCTATAATGATGTAAATCAGAAAGTTGGTGACACCAACACAGCAA
GAGTAACCGATCTTCAGCCAAACACACAATATACGTTCAGTGTTGCTGTCTTCAACAGTG
TTTCATCTGGTCCAAATTCACTACCATATGACGTCATAACACCAGAAAGCACACCCGGTC
CACCACATTTACTGCGTTCAGTCCAATCTTCTGATAAAACGATCCACCTCGCATGGTCAA
GTCCTCGAAAACCAAACGGCGTCATTACTGGTTACGTCATGAGCTACGTATGCCTAAACG
ACACCACGGAACGTTTTGGACCCATCATGCTTGACGATACCTCTTACGTCATGACTCACT
TACGTCCAAATCACTTATATGACATCACAGTTGGCGCTCGTACGTCAAAAGGCGTGGGTG
AATTATCTAATGTTCTCATGTCGACGATGGCAGGCGAAGCCCCCAAACCTGCTACCTTCA
ACGTCACATCCGGTTTGTCGAACGCAAACGTCACGTGGTTCTCAGCCGAGGGGATTCCCG
CTTCAAAATACTTTATTGAATATAAAAAATCAGATGAAGACAAATGGTCTACAGTTGGAC
CTTATGCGTCTGCTAAAACCGGCGAGGCAGTCTCCTTGGAAGGACTCGATCCCGGTACCC
CATACTTGATCCGGATCGTCTCCGTTAACGATTATGACAACACAACGTCAGAATATATCA
TCGTAACCACATCCGGAACAGGTGCATCTTCTGCCGGGATAACTGGACAGATTTGGTTTA
TTGTCCTTATAACTATCATCGTATTCTTGATTATCCTCATTATCATTGTATTTGTCTCAC
GTCGTCGAAAAGGTGGCAAATATTCAGTTGCTGACAAGGAGGGTCAGCTAGTTGATCAGG
AGTCGCAACCAAACAGATCCGAAGACATTGGGGAATATAACGACGATGACGAAGCTAAAA
AGCCATTGAATAGCCCAACTTCGGTTTCGCCGCTCAACGGTAAAACTACGCCGTCTGACG
GTCTACCCACCACCACACCTCTACGCACTAGAGGCGACAGTGTTGCGGGTGATTCGATTG
ATGCTTTCGGCGATGAAGAGGCGCGTGAATTCAACGAAGACGGTTCATTCATCGGGCAGT
ATGGTGCCCTTCAAGAAAGCAGCACAACCACCCCTGCAGCATCACCTGGCGACGTAAATC
CGGCGATTAATCAACCACATGGTGACGCAGTGTGAACAATGTGGAACTATTGATCTACCA
TCTTAGATCAACGCCCGCTTTCCTTGTTTTAATTTAAACCGAACAAATACTTTCCCCCGC
GCGATGCAGTTCGTACTATATCCGTGACGTCATCGCCTGAGGTCACTGTGACGTCATTGT
AGCGCAGTATACTGGGGCGCCGGTTCAAATTTCTTCAAAACAAACAAGTTCCGCTTTTTT
GCGAAAAAAATCCGTAAAACGGAAACGATTTTCGATGTATATGAAGCAAAAAATCCCCTA
AACTGCAAAAGTTTATGAGTCGTGTGTTACATCGCTTGCACTGTTGTAGAATAAATCATT
TGTACTTAACACCCGCTTGTACTTTCTGCTTAGCATGTCGTCGAATAGTCAACGATCTGC
CTTTGCTTTATTCTTAAAATAATAAAACAA
| Gene3D |
Ig-like_fold (IPR013783) - T[30-149] 3.8E-11 - T[151-244] 5.2E-6 - T[254-343] 6.9E-17 - T[353-440] 5.9E-16 - T[445-531] 1.8E-16 - T[537-618] 6.6E-6 - T[619-714] 1.7E-14 - T[719-822] 9.5E-21 - T[823-925] 2.7E-18 - T[926-1029] 1.3E-17 - T[1036-1118] 1.5E-8 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[36-148] 7.9E-7 - T[152-228] 9.0E-6 - T[253-335] 3.19E-16 - T[346-438] 7.78E-16 - T[454-533] 1.0E-18 - T[540-646] 2.41E-9 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[40-148] 8.811 - T[253-342] 11.515 - T[347-437] 10.462 - T[443-529] 11.642 |
| SMART |
Ig_sub (IPR003599) - T[47-150] 150.0 - T[159-244] 7.8 - T[263-345] 4.5E-5 - T[356-439] 7.7E-9 - T[450-531] 2.6E-8 - T[541-617] 0.0042 |
| SMART |
Ig_sub2 (IPR003598) - T[165-230] 0.41 - T[269-333] 4.0E-10 - T[362-428] 2.0E-5 - T[456-520] 2.6E-15 |
| Pfam |
Ig_I-set (IPR013098) - T[454-530] 1.3E-15 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[618-808] 6.86E-26 - T[828-1020] 2.11E-37 - T[1027-1109] 1.75E-9 |
| SMART |
FN3_dom (IPR003961) - T[620-706] 7.3E-7 - T[724-809] 6.6E-5 - T[825-909] 1.7E-9 - T[924-1005] 5.5E-9 - T[1019-1102] 8.8E-4 |
| CDD |
FN3_dom (IPR003961) - T[620-707] 4.38977E-4 - T[726-807] 3.30426E-11 - T[826-919] 2.86102E-12 - T[924-1009] 1.28663E-12 - T[1020-1109] 2.0036E-7 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[622-721] 15.977 - T[726-823] 18.935 - T[827-922] 19.282 - T[923-1019] 16.671 - T[1021-1112] 11.243 |
| Pfam |
FN3_dom (IPR003961) - T[727-807] 1.6E-10 - T[826-912] 3.3E-13 - T[926-1008] 7.1E-9 - T[1021-1097] 2.4E-6 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[1146-1248] 1.2E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 30.839 % | 520 | 9.76E-163 |
| NCHL1_HUMAN | 29.742 % | 473 | 5.23E-146 |
| L1CAM_HUMAN | 29.759 % | 481 | 1.71E-148 |