- Transcript 'Boschl.CG.Botznik201...' >
- Region 'REG00000794' >
- Transcript 'KH2012:KH.L53.14.v1....' >
- Transcript 'KH2012:KH.C1.1024.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1024.v1.A.SL1-1
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
KhC1 [3,624,610 / 3,626,164]
Amino acid sequence
Length: 438
>KH.C1.1024.v1.A.SL1-1
ICVLTMDDIEDVESSSDSELSDSEDSNSKTKVYLPGQTLKEGERLVADQSAYVLYHQAQT
GSPCLSFDILRDDYGDSRDEYPLTANIVAGTQAQSGKSNHVIVMKMSNLNKNNKAPGDES
DEDSDDEESEIKPMLETAMVLHHGGVNRIRCTKVKNRNLAATWSERASVHIWDLTRLIGA
VSEPSSAAGFIAEQKKHPILPAFTFAGHMDEGFALDWSPSGNGQLLTGDCKSNIHLWKPQ
EDGTWHVDQRPFAAHSASVEEVQWSPNEKSVFASCSVDKTIRIWDTRASPLKACMLTTKA
HDADVNVMNWNKNDPFIVSGGDDGVIKVWDLRQFNKGKAIASFKHHTSPITSVEWHPTDK
SIFAACGGDDQLTQWDLAVELDEISNEKNDNLKDVPPQLLFIHQGQKDIKELHWHPQIPG
LIISTALDGFNVFRTISV
Nucleotide sequence
Length: 1,554
>KH2012:KH.C1.1024.v1.A.SL1-1
ATCTGTGTTTTAACAATGGATGATATTGAAGATGTGGAAAGCAGCAGTGATAGTGAACTT
TCAGATTCAGAAGATTCAAATTCCAAAACTAAAGTTTATCTGCCAGGACAAACCCTAAAA
GAAGGAGAGCGTTTGGTTGCAGATCAGTCTGCTTATGTATTGTACCATCAAGCACAAACA
GGGTCGCCTTGTCTAAGTTTTGATATACTGAGAGATGATTATGGGGATTCAAGAGATGAA
TATCCACTTACTGCAAACATTGTTGCTGGTACACAAGCACAGTCCGGTAAATCAAATCAT
GTTATTGTAATGAAAATGTCTAATTTGAACAAGAATAACAAAGCTCCTGGGGATGAGAGT
GATGAGGATAGTGATGATGAGGAGTCAGAGATAAAACCCATGTTGGAGACAGCGATGGTT
TTACATCATGGAGGAGTGAACAGAATCAGATGCACCAAAGTAAAGAACCGGAATCTTGCA
GCAACTTGGTCAGAGAGGGCTTCAGTTCATATATGGGATCTTACAAGGCTCATTGGAGCT
GTGTCAGAGCCATCAAGTGCTGCAGGGTTTATTGCCGAACAAAAGAAACACCCAATACTG
CCTGCATTCACTTTTGCTGGGCACATGGATGAAGGATTTGCATTAGATTGGTCACCTTCA
GGAAACGGCCAACTTCTTACTGGTGATTGCAAAAGTAATATTCATTTGTGGAAACCTCAA
GAAGATGGGACGTGGCATGTTGATCAACGGCCATTTGCCGCTCATTCAGCTTCAGTGGAA
GAAGTACAATGGTCACCTAATGAAAAGAGTGTGTTTGCATCTTGCTCTGTTGATAAAACT
ATCCGAATCTGGGATACTCGTGCCAGCCCATTAAAAGCATGCATGTTAACCACAAAAGCA
CACGACGCAGATGTCAATGTTATGAATTGGAACAAGAATGATCCTTTTATAGTGTCAGGT
GGGGATGATGGCGTGATCAAGGTGTGGGATCTTCGTCAATTTAACAAAGGCAAGGCAATT
GCTTCATTTAAACACCACACGTCTCCTATAACTTCAGTAGAATGGCATCCAACAGACAAA
AGTATTTTTGCTGCCTGCGGCGGAGACGACCAGTTGACGCAGTGGGATCTTGCAGTTGAA
TTAGACGAAATTTCAAACGAGAAAAATGACAATTTAAAAGATGTTCCGCCACAGTTGTTG
TTCATACATCAAGGGCAGAAAGACATTAAAGAACTTCATTGGCATCCACAGATACCTGGA
CTTATTATAAGCACAGCTCTTGATGGCTTTAATGTTTTTCGAACAATAAGTGTCTAAATA
TGACATAGAAATTTTATAATTATCTATATATGACACAGAATTCTTTTACACCTACCGAGT
AAAAAACTGAATTAGTTTCCTGCCATCCCAAAAGTTACTAAAGGAGTCTCCCGAGTCTGT
GCTGTAAAATTTATTTTACCGTCATATTTACCCTGAATAAATTTTAATAATATCAACAGC
ATGGTGATATTTCTTCATACCATGTTTGAAAAGTTTACTGTTGTTTTTAGAAGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-437] 5.5E-104 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[43-110] 7.4E-13 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[129-429] 2.66E-48 |
| SMART |
WD40_repeat (IPR001680) - T[132-173] 54.0 - T[198-238] 0.012 - T[244-285] 1.1E-5 - T[291-330] 4.6E-7 - T[336-376] 3.8E-7 - T[396-434] 96.0 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[160-174] 7.5E-6 - T[272-286] 7.5E-6 - T[317-331] 7.5E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[205-385] 30.505 |
| Pfam |
WD40_repeat (IPR001680) - T[249-285] 4.8E-6 - T[294-330] 2.9E-6 - T[338-376] 0.0042 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[252-287] 13.416 - T[298-332] 14.753 - T[343-377] 9.974 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[317-331] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 55.711 % | 506 | 7.92E-179 |
| RBBP7_HUMAN | 31.461 % | 137 | 5.19E-36 |
| RBBP4_HUMAN | 31.356 % | 138 | 2.14E-36 |