- Transcript 'KH2012:KH.S610.5.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C9.398.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S55...' >
- Transcript 'KH2012:KH.C1.1024.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1024.v1.A.SL2-1
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
KhC1 [3,624,592 / 3,626,164]
Amino acid sequence
Length: 444
>KH.C1.1024.v1.A.SL2-1
VLTFIKICVLTMDDIEDVESSSDSELSDSEDSNSKTKVYLPGQTLKEGERLVADQSAYVL
YHQAQTGSPCLSFDILRDDYGDSRDEYPLTANIVAGTQAQSGKSNHVIVMKMSNLNKNNK
APGDESDEDSDDEESEIKPMLETAMVLHHGGVNRIRCTKVKNRNLAATWSERASVHIWDL
TRLIGAVSEPSSAAGFIAEQKKHPILPAFTFAGHMDEGFALDWSPSGNGQLLTGDCKSNI
HLWKPQEDGTWHVDQRPFAAHSASVEEVQWSPNEKSVFASCSVDKTIRIWDTRASPLKAC
MLTTKAHDADVNVMNWNKNDPFIVSGGDDGVIKVWDLRQFNKGKAIASFKHHTSPITSVE
WHPTDKSIFAACGGDDQLTQWDLAVELDEISNEKNDNLKDVPPQLLFIHQGQKDIKELHW
HPQIPGLIISTALDGFNVFRTISV
Nucleotide sequence
Length: 1,572
>KH2012:KH.C1.1024.v1.A.SL2-1
GTTCTTACATTTATTAAGATCTGTGTTTTAACAATGGATGATATTGAAGATGTGGAAAGC
AGCAGTGATAGTGAACTTTCAGATTCAGAAGATTCAAATTCCAAAACTAAAGTTTATCTG
CCAGGACAAACCCTAAAAGAAGGAGAGCGTTTGGTTGCAGATCAGTCTGCTTATGTATTG
TACCATCAAGCACAAACAGGGTCGCCTTGTCTAAGTTTTGATATACTGAGAGATGATTAT
GGGGATTCAAGAGATGAATATCCACTTACTGCAAACATTGTTGCTGGTACACAAGCACAG
TCCGGTAAATCAAATCATGTTATTGTAATGAAAATGTCTAATTTGAACAAGAATAACAAA
GCTCCTGGGGATGAGAGTGATGAGGATAGTGATGATGAGGAGTCAGAGATAAAACCCATG
TTGGAGACAGCGATGGTTTTACATCATGGAGGAGTGAACAGAATCAGATGCACCAAAGTA
AAGAACCGGAATCTTGCAGCAACTTGGTCAGAGAGGGCTTCAGTTCATATATGGGATCTT
ACAAGGCTCATTGGAGCTGTGTCAGAGCCATCAAGTGCTGCAGGGTTTATTGCCGAACAA
AAGAAACACCCAATACTGCCTGCATTCACTTTTGCTGGGCACATGGATGAAGGATTTGCA
TTAGATTGGTCACCTTCAGGAAACGGCCAACTTCTTACTGGTGATTGCAAAAGTAATATT
CATTTGTGGAAACCTCAAGAAGATGGGACGTGGCATGTTGATCAACGGCCATTTGCCGCT
CATTCAGCTTCAGTGGAAGAAGTACAATGGTCACCTAATGAAAAGAGTGTGTTTGCATCT
TGCTCTGTTGATAAAACTATCCGAATCTGGGATACTCGTGCCAGCCCATTAAAAGCATGC
ATGTTAACCACAAAAGCACACGACGCAGATGTCAATGTTATGAATTGGAACAAGAATGAT
CCTTTTATAGTGTCAGGTGGGGATGATGGCGTGATCAAGGTGTGGGATCTTCGTCAATTT
AACAAAGGCAAGGCAATTGCTTCATTTAAACACCACACGTCTCCTATAACTTCAGTAGAA
TGGCATCCAACAGACAAAAGTATTTTTGCTGCCTGCGGCGGAGACGACCAGTTGACGCAG
TGGGATCTTGCAGTTGAATTAGACGAAATTTCAAACGAGAAAAATGACAATTTAAAAGAT
GTTCCGCCACAGTTGTTGTTCATACATCAAGGGCAGAAAGACATTAAAGAACTTCATTGG
CATCCACAGATACCTGGACTTATTATAAGCACAGCTCTTGATGGCTTTAATGTTTTTCGA
ACAATAAGTGTCTAAATATGACATAGAAATTTTATAATTATCTATATATGACACAGAATT
CTTTTACACCTACCGAGTAAAAAACTGAATTAGTTTCCTGCCATCCCAAAAGTTACTAAA
GGAGTCTCCCGAGTCTGTGCTGTAAAATTTATTTTACCGTCATATTTACCCTGAATAAAT
TTTAATAATATCAACAGCATGGTGATATTTCTTCATACCATGTTTGAAAAGTTTACTGTT
GTTTTTAGAAGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[48-443] 1.6E-104 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[49-116] 7.5E-13 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[135-435] 2.6E-48 |
| SMART |
WD40_repeat (IPR001680) - T[138-179] 54.0 - T[204-244] 0.012 - T[250-291] 1.1E-5 - T[297-336] 4.6E-7 - T[342-382] 3.8E-7 - T[402-440] 96.0 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[166-180] 7.8E-6 - T[278-292] 7.8E-6 - T[323-337] 7.8E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[211-391] 30.505 |
| Pfam |
WD40_repeat (IPR001680) - T[255-291] 4.9E-6 - T[300-336] 2.9E-6 - T[344-382] 0.0043 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[258-293] 13.416 - T[304-338] 14.753 - T[349-383] 9.974 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[323-337] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 55.711 % | 506 | 9.28E-179 |
| RBBP7_HUMAN | 31.461 % | 137 | 6.07E-36 |
| RBBP4_HUMAN | 31.356 % | 138 | 2.36E-36 |