- Clone 'cien45860' >
- Transcript 'KH2012:KH.C1.1027.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1027.v1.A.nonSL2-1
Possible name(s)
HDAC1; HDAC2; HDAC3
Gene model
Location
KhC1 [1,063,004 / 1,084,778]
Amino acid sequence
Length: 558
>KH.C1.1027.v1.A.nonSL2-1
SAIMALSNPGGSRKVCYYYDSDIGNNYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRP
HKCNAEEMSRYHSDDYIKFLRSIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSGGG
SIAGAVKINKHQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDID
IHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYALNFPLRDGMDDEC
DGILPAKCCCTSVWGRFIXQGIGLVVSTLQLKCLEYVKKFNVPILMLGGGGYTIRNVARC
WTYETAVALGQEIPNELPYNDYFEYFGPDFKLHISPSNMSNQNTMEYLQKIRQRLFENLR
MLPHAPGVQMQDIPPDAVVSGSDDEAMDDPDKKTSIRASDKRIQRPDEYSDSEDEGEGGR
KNEETHKKKRKVIEVEGVAQPQETKPAPVAEPATENGVDKPEPTKEALDTSVPASTTEPV
ETTPVTQVPDDVSTKDAVVPEASEVQNENVAQPETTSETPVVQNEEKEAAAPPSEEVAQA
PDSTTPDEEKQEDEKMEI
Nucleotide sequence
Length: 1,996
>KH2012:KH.C1.1027.v1.A.nonSL2-1
AAAAGAATCAAAAATTGAAAATTTAACAAATTTCGTGAAAGTTTAAATTGATTTTAATCA
GCAATCATGGCGTTATCCAACCCTGGAGGCAGTCGAAAAGTCTGCTATTATTATGACTCT
GATATTGGTAACAACTACTATGGTCAAGGCCACCCAATGAAACCACACAGAATTCGCATG
ACACACAATCTCCTTCTTAATTATGGATTGTACAGAAAGATGGAGATCTATCGTCCCCAT
AAATGCAATGCTGAAGAGATGTCACGATACCACAGCGATGATTACATTAAGTTCCTGAGA
AGCATTCGTCCAGATAACATGTCAGAATACACAAAACAAATGCAGCGATTTAATGTGGGT
GAGGATTGCCCAGTGTTTGATGGCTTGTATGAATTCTGTCAATTATCTGGTGGGGGATCC
ATAGCTGGTGCAGTTAAGATAAACAAACACCAAACAGACATTGCAATCAACTGGGCAGGC
GGGCTTCATCATGCAAAGAAATCTGAAGCATCTGGATTCTGTTACGTTAATGATATTGTT
CTGGCTATCCTGGAACTACTAAAGTACCACCAGCGTGTCTTGTACATTGACATTGACATC
CACCATGGAGATGGGGTAGAAGAAGCCTTCTATACCACAGATCGTGTCATGACGGTTTCA
TTTCATAAATATGGAGAATATTTCCCAGGCACTGGAGATCTAAGGGATATAGGGGCAGGG
AAAGGCAAATATTATGCTCTTAACTTCCCACTAAGAGATGGAATGGATGATGAATGTGAT
GGAATATTACCAGCCAAGTGCTGTTGTACTTCAGTGTGGGGCAGATTCATTGANCAGGGG
ATAGGCTTGGTTGTTTCAACCTTACAGTTAAAGTGTCTTGAGTACGTGAAGAAATTCAAC
GTCCCAATCTTAATGTTGGGTGGAGGTGGTTACACCATTCGTAACGTAGCTAGATGTTGG
ACATATGAGACTGCTGTGGCTCTGGGGCAGGAAATTCCAAACGAGCTTCCCTACAATGAT
TACTTTGAATACTTTGGACCAGACTTCAAGCTTCATATCAGTCCAAGCAACATGAGCAAC
CAAAACACGATGGAATATTTGCAGAAGATCCGACAACGATTGTTTGAAAACCTTCGAATG
TTGCCTCATGCACCTGGCGTGCAAATGCAAGATATCCCACCAGATGCTGTTGTATCAGGA
AGCGATGATGAAGCAATGGATGATCCGGATAAGAAGACATCCATCCGAGCATCCGATAAA
CGGATCCAACGTCCAGATGAATACTCCGACTCCGAGGATGAAGGAGAGGGCGGAAGAAAG
AATGAGGAAACTCACAAGAAGAAGAGGAAAGTTATTGAGGTGGAAGGTGTTGCTCAGCCG
CAGGAGACTAAACCAGCTCCAGTAGCGGAGCCTGCCACGGAAAATGGAGTCGATAAGCCG
GAACCAACTAAAGAAGCTTTAGATACAAGCGTGCCTGCTAGCACTACAGAGCCTGTTGAA
ACAACTCCTGTGACTCAGGTACCTGATGACGTAAGCACCAAGGATGCAGTTGTGCCTGAA
GCAAGTGAAGTCCAAAACGAAAACGTCGCCCAACCCGAGACCACAAGTGAAACCCCTGTT
GTTCAAAATGAAGAAAAAGAAGCAGCAGCGCCACCTAGCGAGGAAGTAGCACAAGCTCCA
GACTCCACCACTCCTGATGAAGAGAAGCAGGAAGATGAAAAAATGGAAATTTGATGACGT
GTTCGTAACGGTGACGTCACATAAAAATCTTGCTAACCTGCCAATTAGTTATTGGGCCAG
ATGGGCCACACTTGTATATTCCACACAAAATAAACTCTTGTATAAAATCGTATCTTCTGC
GCACTCTAGACAATTTTCAAAATTGCTTTTTTTAAACTACAACGACTGATTTTATAAATT
AGATTTGTACGCCGTACATTGTACTGACCATTACTTTATTTCGTTTCCAACTATCAATAA
ACCAAGGAGTCGTGCA
| PIRSF |
His_deacetylse_1 (IPR003084) - T[2-245] 3.1E-138 - T[264-445] 6.0E-49 - T[463-557] 420.0 |
| Gene3D |
His_deacetylse_dom_sf (IPR037138) - T[6-240] 1.7E-109 - T[261-364] 2.5E-31 |
| PANTHER |
His_deacetylse (IPR000286) - T[11-240] 1.5E-221 - T[272-443] 1.5E-221 - T[503-553] 1.5E-221 |
| SUPERFAMILY |
Ureohydrolase_dom_sf (IPR023696) - T[13-362] 4.65E-104 |
| Pfam |
His_deacetylse_dom (IPR023801) - T[32-239] 2.2E-56 |
| PRINTS |
His_deacetylse_1 (IPR003084) - T[34-51] 6.9E-61 - T[67-85] 6.9E-61 - T[98-115] 6.9E-61 - T[119-139] 6.9E-61 - T[160-176] 6.9E-61 - T[219-232] 6.9E-61 |
| PRINTS |
His_deacetylse (IPR000286) - T[141-164] 2.0E-18 - T[173-188] 2.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HDAC1_HUMAN | 77.5 % | 675 | 0 |
| HDAC2_HUMAN | 74.839 % | 697 | 0 |
| HDAC3_HUMAN | 53.647 % | 467 | 7.77E-162 |