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  1. Transcript 'KH2012:KH.C1.1045.v1...'

Transcript Model

Transcript Id

KH2012:KH.C1.1045.v1.A.SL1-1

Possible name(s)

CPN2; LGR5; LRRC15

Location

KhC1 [1,815,469 / 1,820,754]

Sequences

Amino acid sequence

Length: 730

>KH.C1.1045.v1.A.SL1-1
LLNKITMAMQRWCVFVVLLHYTSARVVRPNMKTQECLKTSHYLRDPNEYVCKDLGLCYKH
YCRAPARKCVGCDYTRKPSCLLVGNEAQNISSQLNKKPKPRIRNPEYENCTNCIHGVLRI
KAGDRECLGFLAAVPNAKQYRLVVVTAASCVTRFKVTCAVPNTANNESRSIHGSAACFGN
PDTRIDQVSKGFRSYCATITNNGSTVTVPLNNEFVLIPRQYIECGDCLYDIAVIKLRANH
LRDLKLTSENAHVLQTISKPKKIKKTPFFVGYNIPNSPDINWDSQRIFFSTEEKFLSQKM
CMDINSTDIGEYIVNGSPVLYKLNSSSVATNATFQTAHTVAGVVSYVRPLGSTGVTRASV
VRITEQLVDFIWRWLKVKWKENECSQPDDRLNAKYDCYPSFKDNGGNNSLCLCARGWKNE
RGHCKTATSEGLRNCVWDKTEKMMTCTGGIMSESALSSPVEMGLDTTVLPGSTKHLSFLS
HEIKDGVELQEVLRHLPNLKSLEVEHANLQTLSISTFQGNPLLQRLSLSNNNLSRINEDL
LIRQRNLLSLNLANNRLHYIPRRVFRKQLKLRELNARGNEIERIATRALRKNTKLQRIRL
SRNRITTIPPTLFITNTDLREVYLDYNHITEISGTTFRNCHRLKRLNVEGNQLTNIPREL
FLSNIRLTVVNLGKNRISNLPHDLFDNQLYLEEVWLNENPELPSTLTLGAYLSQASINRL
KHLLEVYSKP

Nucleotide sequence

Length: 2,408

>KH2012:KH.C1.1045.v1.A.SL1-1
GTGCGGGTAGTTAATGCATTTGTAATGCGCATATGAATATCGATGAATTATCTGTAATGG
AAAACTTCGACAATGTGTAGTAGATTGTAGCTTTTGAATAAGATTACAATGGCAATGCAA
CGATGGTGTGTGTTCGTTGTGTTGCTGCATTACACAAGTGCACGAGTGGTCAGACCGAAC
ATGAAGACGCAGGAATGCCTAAAGACTTCTCACTATTTGCGGGACCCAAATGAATACGTT
TGCAAGGACTTAGGATTGTGTTATAAGCATTACTGTAGGGCCCCTGCAAGGAAATGCGTT
GGTTGCGATTATACTCGAAAACCATCATGCCTTCTTGTTGGTAATGAGGCGCAAAATATT
TCATCACAATTGAACAAAAAGCCAAAACCGCGGATAAGAAATCCTGAATACGAAAATTGC
ACGAACTGCATACACGGTGTACTACGAATCAAAGCCGGCGACCGGGAATGCCTTGGATTT
CTGGCAGCTGTTCCAAACGCGAAGCAATACAGACTCGTTGTGGTTACCGCTGCTAGCTGT
GTTACCCGTTTTAAAGTGACTTGTGCGGTTCCTAATACAGCAAACAACGAATCGCGTTCA
ATCCATGGGTCTGCGGCTTGCTTCGGAAATCCGGACACCCGGATCGATCAGGTCTCTAAA
GGGTTTAGATCCTACTGCGCTACTATCACTAATAACGGTTCAACGGTGACAGTACCTTTG
AATAATGAATTCGTTCTCATACCACGTCAGTACATTGAATGTGGCGATTGCTTATACGAC
ATTGCTGTAATCAAACTGCGCGCAAACCATCTTAGAGACTTGAAACTGACTTCAGAAAAC
GCCCATGTTTTACAGACGATCAGTAAGCCAAAAAAGATCAAAAAAACTCCATTTTTTGTT
GGTTACAATATTCCGAATTCGCCCGATATTAACTGGGACAGCCAACGTATATTCTTCTCG
ACAGAAGAGAAATTTCTAAGCCAGAAAATGTGTATGGACATTAATTCAACCGACATAGGC
GAGTACATAGTAAATGGAAGTCCTGTACTGTACAAGCTAAACTCAAGTTCTGTTGCAACC
AACGCTACATTCCAAACAGCGCATACTGTAGCTGGTGTCGTATCCTATGTTCGACCATTA
GGCAGCACTGGTGTAACAAGGGCATCGGTAGTGAGAATAACAGAGCAACTGGTCGATTTT
ATTTGGAGATGGCTCAAAGTTAAATGGAAAGAGAACGAATGCAGCCAACCGGATGACAGA
TTAAATGCTAAATACGATTGTTATCCGTCGTTTAAAGATAATGGTGGAAATAATTCTTTG
TGTCTATGTGCTCGGGGTTGGAAAAATGAAAGGGGCCACTGCAAAACAGCAACATCAGAA
GGGCTGCGCAACTGTGTTTGGGACAAAACAGAGAAGATGATGACGTGTACAGGAGGCATT
ATGAGCGAATCGGCATTGAGTAGCCCGGTAGAGATGGGACTAGATACAACAGTTTTGCCA
GGGTCTACAAAACATCTAAGTTTTCTATCGCATGAAATTAAAGACGGGGTGGAATTGCAA
GAAGTGCTGAGACATTTACCAAACCTTAAAAGCTTGGAAGTTGAGCATGCGAATTTACAG
ACCCTATCAATTTCAACGTTCCAAGGCAACCCATTACTGCAAAGGTTGTCTCTTAGCAAC
AACAATTTATCAAGAATAAACGAAGACTTGTTGATTAGACAACGAAACTTATTATCTCTG
AATCTGGCAAATAACCGGCTACACTACATCCCGCGAAGGGTGTTCCGAAAACAACTTAAA
CTTAGAGAATTAAACGCAAGGGGAAATGAAATTGAGCGTATTGCAACTCGAGCACTTCGT
AAAAACACCAAGTTACAAAGGATACGTCTAAGCCGTAACAGAATCACCACCATCCCACCA
ACCCTGTTTATAACCAACACCGACTTACGGGAAGTCTACTTAGACTATAACCACATTACA
GAGATATCTGGAACCACTTTCCGCAACTGTCATCGGTTAAAGAGACTCAACGTAGAAGGA
AACCAGCTAACCAACATCCCAAGAGAACTTTTCCTCTCGAATATAAGACTCACTGTAGTT
AACTTGGGTAAAAATAGAATCTCAAATCTCCCACACGATTTGTTTGATAACCAGTTATAT
CTTGAAGAAGTCTGGCTGAATGAAAACCCCGAGCTACCCTCGACTTTAACGTTAGGCGCC
TATTTGAGTCAGGCTTCAATAAATAGGCTTAAACATCTACTAGAAGTTTACAGCAAGCCC
TAACCCACAGTTTAATTGAAATCTATTCTAATCAGCATATTTTGTTATTTGCTCGTTATT
CAATGTGTTTGTGTGTTTTACTAAAAGTGCCACAATTTTCTAAACAGCAATAAATTTCGC
AATTGTAA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[407-599] 7.0E-23 - T[600-727] 3.7E-22
SMART
Leu-rich_rpt_typical-subtyp (IPR003591) - T[496-519] 2.4 - T[521-543] 170.0 - T[545-567] 3.0 - T[570-591] 320.0 - T[593-615] 9.9 - T[617-639] 22.0 - T[640-663] 7.5 - T[665-687] 20.0
Pfam
Leu-rich_rpt (IPR001611) - T[497-557] 7.0E-9 - T[594-653] 9.4E-13
ProSiteProfiles
Leu-rich_rpt (IPR001611) - T[498-519] 4.539 - T[522-543] 6.842 - T[546-567] 6.672 - T[570-591] 6.049 - T[594-615] 6.996 - T[618-639] 6.873 - T[642-663] 7.566 - T[666-687] 6.218

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CPN2_HUMAN 32.632 % 97.1 5.88E-21
LRC15_HUMAN 32.195 % 97.4 4.91E-21
LGR5_HUMAN 34.973 % 96.7 1.55E-20





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