Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.1049.v1.A.ND1-1

Possible name(s)

CLDN14; CLDN18; CLDN19

Gene model

KH2012:KH.C1.1049

Location

KhC1 [3,527,163 / 3,536,847]

Sequences

Amino acid sequence

Length: 230

>KH.C1.1049.v1.A.ND1-1
QRFKMECQMICFVVGFLATTGCVFCTFWNEWAVSSPSASAPVLGPIWAFSGLWSECMQYS
TGQYQCNGFGMMKLPSYILAIRAMMCIALSLSVIGCFVTLIGMECSKLLDGNLSAKRNLM
RISGVLFLVAGVLTLASVSWYTGVVVEDFFSVFTQDNMIIYEMGAALYLGFVSSALALLT
AILCFCMPGPKPEDEDSPPYKYTPTGYTVREPYETKVQIPKSKDKYSEYV

Nucleotide sequence

Length: 991

>KH2012:KH.C1.1049.v1.A.ND1-1
TTAGGATCTGAAGTACAAAGGTAGCAACGCTTTAAAATGGAATGTCAAATGATTTGTTTC
GTGGTAGGATTCCTCGCAACCACAGGCTGTGTTTTCTGTACCTTCTGGAACGAATGGGCC
GTGTCAAGCCCGTCCGCAAGTGCCCCTGTGCTCGGCCCCATCTGGGCGTTCTCCGGTCTC
TGGTCTGAATGTATGCAGTACAGCACTGGACAGTATCAATGCAACGGTTTTGGAATGATG
AAACTGCCAAGTTACATTCTCGCAATACGGGCAATGATGTGCATCGCGCTCTCACTATCG
GTGATTGGCTGCTTTGTTACTTTAATCGGTATGGAATGTTCGAAATTATTGGACGGCAAT
CTTTCTGCGAAGCGGAATCTTATGCGCATTTCTGGAGTTTTATTTCTTGTTGCTGGAGTT
CTAACTCTTGCATCGGTGTCATGGTACACTGGAGTTGTGGTTGAGGATTTCTTTTCCGTT
TTCACGCAAGATAATATGATCATATACGAAATGGGTGCGGCGCTGTATCTTGGATTCGTC
AGCAGTGCACTAGCTCTTCTAACAGCAATACTCTGCTTCTGCATGCCTGGACCTAAACCG
GAAGATGAGGATTCGCCCCCTTACAAATATACGCCAACAGGTTACACTGTGCGGGAGCCT
TACGAAACCAAAGTACAAATCCCAAAATCCAAGGACAAATATTCCGAATATGTTTGATCA
AAATGGCCGAAAAGGAAATAAACAAATATCAACTAAACTCAGTCTATATGGAAAGAAACT
AAAGCTATGTACGTTTGGTTTCCTAAACTTTATATTATTCGGTTATAACACTTTGTGTGC
GTCATTTTGCCTTTGTATATTTCATTGCAAGAAATGTTTTCGCTATTTTCGATACGTTTA
ATTTTGGAAGCGATATATACAGTTTCTATTTCTAAGTTTATTCAATAAAATGCATGCAGC
GACTGCGTGATCGTGCTGTTTTTTTAAAAAA

InterProScan

PANTHER	Claudin (IPR006187) - T[4-230] 4.4E-126
Pfam	PMP22/EMP/MP20/Claudin (IPR004031) - T[5-183] 6.3E-22
ProSitePatterns	Claudin_CS (IPR017974) - T[51-66] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CLD19_HUMAN	32.579 %	113	5.45E-31
CLD18_HUMAN	28.372 %	102	2.0E-26
CLD14_HUMAN	35.165 %	103	6.78E-27