- Transcript 'KH2012:KH.C9.404.v2....' >
- Clone 'cien231540' >
- Transcript 'KH2012:KH.C1.11.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.11.v2.A.nonSL2-3
Possible name(s)
HNRNPA1; HNRNPA1L2; HNRNPA3
Gene model
Location
KhC1 [4,601,056 / 4,622,714]
Amino acid sequence
Length: 472
>KH.C1.11.v2.A.nonSL2-3
FGYIYFFAATVNFRSKLNFQFYLDSALTNIMKTEDIDETNGEDINEPEQQRKLFIGGLSF
DTTNESLSAYFTKFGEVTDSVVMMDPKTKKSRGFGFVTFKRIKMVDAVMSERPHKLDGRT
VTPKRAVSREDSEKPGAHATVKKIFVGGIKDDTTEQHLKDHFRKFGIVELVEVMEDRETR
KKRGFAFVTFADHDPVDKIVSQKYHTINGHNCEVRKALPKNELDKHKNKPGDRGPPPPEY
MRDRERDYRRSPPPPAYGHDRYGPPGYDRYGPSSAYDRYAPSSYDRGYPPPPRDYDRYGP
PPREYASEYDRYREYRDYPREYSRSSSDYYRREASYSDRPSSYDYPPREEYVSSSDRERS
SALPPSTSERDRGYSSSHTTSHESRDTRDTRDSRDPYSRSSSSAAPEYDYSRKTEGGSNG
YDYSSYMNSSSNYGPMKSSYSSRSAGPYTSSYPSAGAAPSGSSGQYSSSARY
Nucleotide sequence
Length: 2,177
>KH2012:KH.C1.11.v2.A.nonSL2-3
ATTTCGGATATATTTATTTCTTTGCAGCGACGGTAAATTTTCGTTCTAAGTTAAACTTTC
AATTTTATCTTGATAGTGCGTTAACCAACATAATGAAGACAGAAGATATCGACGAGACGA
ATGGAGAAGATATCAATGAACCTGAGCAACAGCGCAAACTTTTTATTGGTGGCCTTAGCT
TTGATACAACAAATGAAAGTTTGAGTGCATACTTTACTAAATTTGGAGAAGTAACCGATT
CAGTTGTGATGATGGACCCAAAAACCAAGAAATCAAGAGGTTTCGGATTTGTCACATTTA
AAAGAATCAAAATGGTTGATGCTGTTATGAGTGAACGACCACATAAATTAGATGGAAGAA
CGGTCACACCAAAACGTGCCGTTTCCAGAGAGGATTCAGAAAAACCTGGTGCACATGCAA
CGGTAAAGAAAATTTTTGTTGGTGGAATAAAAGATGACACAACAGAACAACATCTTAAAG
ATCATTTTCGAAAATTTGGGATTGTGGAACTTGTTGAGGTGATGGAGGATAGAGAAACAA
GAAAAAAACGAGGATTTGCTTTTGTTACTTTTGCTGATCATGATCCTGTTGATAAGATTG
TCAGTCAGAAATATCACACGATTAATGGACACAACTGTGAAGTGAGAAAGGCACTTCCTA
AGAATGAACTTGACAAACATAAAAACAAACCTGGTGACAGAGGTCCACCACCACCTGAAT
ACATGAGAGACAGAGAAAGAGATTATAGAAGATCACCACCACCACCAGCATATGGACATG
ACAGATATGGACCTCCAGGTTATGATCGATACGGCCCTTCCAGTGCTTACGATCGATATG
CACCAAGCAGTTATGATCGTGGTTACCCACCTCCTCCTCGTGACTATGATAGATATGGTC
CCCCTCCAAGGGAATATGCCAGTGAATACGATCGATACAGAGAATATAGGGACTATCCTA
GAGAATATTCCCGGAGTTCCTCCGATTACTATAGAAGGGAAGCTTCATATTCTGATCGAC
CATCATCGTATGACTACCCGCCTCGTGAAGAATACGTATCATCTTCGGATAGAGAAAGAT
CTTCTGCTCTTCCACCGAGCACTTCGGAGCGCGATCGGGGTTACAGCAGCTCACATACCA
CGTCACATGAGAGCAGGGATACTCGTGATACAAGGGATTCCCGTGATCCTTACTCACGAA
GTTCTAGTTCAGCAGCTCCGGAATATGATTATTCAAGAAAAACTGAAGGTGGCAGCAATG
GATATGATTATTCTTCTTACATGAACAGCAGCAGCAACTATGGTCCCATGAAGAGCAGTT
ACAGTTCTCGATCCGCTGGCCCATACACAAGTTCTTACCCAAGCGCAGGTGCTGCTCCAA
GTGGAAGCTCAGGGCAGTACAGTTCAAGTGCACGATACTAACTAACTGTCTGCATAGACA
GTGCAGCGCAGGTTTGCCCACACAAACATTTGTAAATAGACGTCCTGTTTTCGAGATGAC
GAAATTTTGTCTCTCGGTTGAAAAAAGTCTATAACTTGAAAAGGAGCCTCAGAATTCTCA
CAAGGTTGTTTCAACAAACAGTTGGGCATTTTATAAGAAAAAGAAGTTATATCAAAGCAA
GAAGATTCCAAAGTTCAGTTAAGCATCAAATCGCTTACGAAGCAGGTCAACTATGTTATA
GTCCTTGGTAAGCATTACCAGTTTCTTTTGCTCGCCAGTGACAATTTTAGAACTGAACAA
AGTTGCACATGGTTCAGTGTAGCTTAACTAACAAAGCATTGGAAAGTGGATAGAACTTTT
CTTTGCACCTTCAGTTAAATGTTTGTCTGAAAGCATCAGCATTTTCACAGGAAAGGGCTT
TAATAACAACCACATACTGTAGTGTTGTACATATGTATGTATTCATGGCAATGGGATGGT
TATTCAAAATAATGAAGTGAATTTTGAGATCATTTAACCACTTTTGTTACAGGTGAATGT
ATTGTTATAAAGATTCTGAATTAGTAATACCTGCTTAACTGCCTTGGTTTTTTCACTGGT
CCCCCTTTTAATTTTTTTTTGTTTATTCCATCATGGAGGTTATAGTGTTCACTTGACCAT
TATCAATTACTGTTTTTATTACCAATGAAATTTTGACCTAATTAATAAACCACCTTTTGT
ATAATTCCGTTAAAACA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[46-132] 1.4E-25 - T[136-217] 1.3E-23 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[47-136] 5.37E-24 - T[139-236] 8.06E-24 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[51-134] 16.807 - T[142-219] 16.125 |
| SMART |
RRM_dom (IPR000504) - T[52-124] 2.8E-22 - T[143-215] 3.2E-21 |
| Pfam |
RRM_dom (IPR000504) - T[53-120] 1.3E-14 - T[144-207] 4.8E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ROA1_HUMAN | 69.663 % | 273 | 4.37E-88 |
| RA1L2_HUMAN | 69.101 % | 272 | 2.3E-88 |
| ROA3_HUMAN | 70.718 % | 270 | 7.47E-87 |