- Transcript 'KH2012:KH.C1.11.v1.A...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Cisavi.CG.ENS81.R30....' >
- Transcript 'KH2012:KH.C1.11.v3.A...' >
- Transcript 'KH2012:KH.C1.11.v5.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.11.v5.A.nonSL2-2
Possible name(s)
HNRNPA1; HNRNPA1L2; HNRNPA3
Gene model
Location
KhC1 [4,603,459 / 4,622,714]
Amino acid sequence
Length: 374
>KH.C1.11.v5.A.nonSL2-2
FGYIYFFAATVNFRSKLNFQFYLDSALTNIMKTEDIDETNGEDINEPEQQRKLFIGGLSF
DTTNESLSAYFTKFGEVTDSVVMMDPKTKKSRGFGFVTFKRIKMVDAVMSERPHKLDGRT
VTPKRAVSREDSEKPGAHATVKKIFVGGIKDDTTEQHLKDHFRKFGIVELVEVMEDRETR
KKRGFAFVTFADHDPVDKIVSQKYHTINGHNCEVRKALPKNELDKHKNKPGDRGPPPPEY
MRDRERDYRRSPPPPAYGHDRYGPPGYDRYGPSSAYDRYAPSSYDRGYPPPPRDYDRYGP
PPREYASEYDRYREYRDYPREYSRSSSDYYRREASYSDRPSSYDYPPREDLNVSHHEGAF
HVGMFSTNANEIGT
Nucleotide sequence
Length: 1,427
>KH2012:KH.C1.11.v5.A.nonSL2-2
ATTTCGGATATATTTATTTCTTTGCAGCGACGGTAAATTTTCGTTCTAAGTTAAACTTTC
AATTTTATCTTGATAGTGCGTTAACCAACATAATGAAGACAGAAGATATCGACGAGACGA
ATGGAGAAGATATCAATGAACCTGAGCAACAGCGCAAACTTTTTATTGGTGGCCTTAGCT
TTGATACAACAAATGAAAGTTTGAGTGCATACTTTACTAAATTTGGAGAAGTAACCGATT
CAGTTGTGATGATGGACCCAAAAACCAAGAAATCAAGAGGTTTCGGATTTGTCACATTTA
AAAGAATCAAAATGGTTGATGCTGTTATGAGTGAACGACCACATAAATTAGATGGAAGAA
CGGTCACACCAAAACGTGCCGTTTCCAGAGAGGATTCAGAAAAACCTGGTGCACATGCAA
CGGTAAAGAAAATTTTTGTTGGTGGAATAAAAGATGACACAACAGAACAACATCTTAAAG
ATCATTTTCGAAAATTTGGGATTGTGGAACTTGTTGAGGTGATGGAGGATAGAGAAACAA
GAAAAAAACGAGGATTTGCTTTTGTTACTTTTGCTGATCATGATCCTGTTGATAAGATTG
TCAGTCAGAAATATCACACGATTAATGGACACAACTGTGAAGTGAGAAAGGCACTTCCTA
AGAATGAACTTGACAAACATAAAAACAAACCTGGTGACAGAGGTCCACCACCACCTGAAT
ACATGAGAGACAGAGAAAGAGATTATAGAAGATCACCACCACCACCAGCATATGGACATG
ACAGATATGGACCTCCAGGTTATGATCGATACGGCCCTTCCAGTGCTTACGATCGATATG
CACCAAGCAGTTATGATCGTGGTTACCCACCTCCTCCTCGTGACTATGATAGATATGGTC
CCCCTCCAAGGGAATATGCCAGTGAATACGATCGATACAGAGAATATAGGGACTATCCTA
GAGAATATTCCCGGAGTTCCTCCGATTACTATAGAAGGGAAGCTTCATATTCTGATCGAC
CATCATCGTATGACTACCCGCCTCGTGAAGATTTGAATGTCTCCCATCACGAAGGGGCTT
TTCATGTTGGCATGTTTTCTACAAATGCCAACGAAATAGGCACGTGATAATGTGAATGAT
TGTTTAAATGTTATCTGGGGTGGTCAAACTGCCACCCTACAACCAAGGGTTTTAACGCAT
GTGCAGTGGACTTAATATTTACATTGACGGTAGATAATCTGGGAAGAGTTGAACGCTTCC
AGGCTCTGTCTTTGTAGTGCTAGAGCGCCTCTAAATGGCGTAGATTCTTAGCTACACCGT
CATAAATCATCTTACATGTTCTTCAACTAACATTTTTTTAGTTATTAAAAAATAGGTTGG
AAACTAAAAAGTCAATGCATATTCCTTACACCTCTTTTAGTCACTTG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[46-132] 9.8E-26 - T[136-217] 8.9E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[47-137] 2.96E-24 - T[137-236] 2.01E-23 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[51-134] 16.807 - T[142-219] 16.125 |
| SMART |
RRM_dom (IPR000504) - T[52-124] 2.8E-22 - T[143-215] 3.2E-21 |
| Pfam |
RRM_dom (IPR000504) - T[53-120] 8.9E-15 - T[144-208] 3.3E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ROA1_HUMAN | 69.663 % | 269 | 7.14E-88 |
| RA1L2_HUMAN | 69.101 % | 268 | 7.3E-88 |
| ROA3_HUMAN | 70.718 % | 266 | 1.04E-86 |