- Transcript 'KH2012:KH.C1.1100.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1100.v1.A.SL2-1
Possible name(s)
PCDH17; PCDH18; PCDHGB5
Gene model
Location
KhC1 [656,690 / 666,477]
Amino acid sequence
Length: 1,030
>KH.C1.1100.v1.A.SL2-1
RTMVAYRALAPWVVTVVVMSSCCIMTSYASSTTVRKSVYLREDSNSGTIVEEISDVLNMR
ISRNRGQNFQQLSQKLITSNPNPSPEELVSWLSLDRVTGRVTLARRLDREELCVDSVVCS
IRMQVFTEIYVHTSFRMVYLDVVIIDVNEHVPEFSSRYILINVSEDARPGDVISLDKYQA
VDRDAGNNSILTYTLSQSNEFRLGQYFDETGSQHLHIEVVKQLDYEKKQLYRLTLTARDH
GEPSLTNHVPLQVRVTDVNDNEPLFDRKEYSIVVREDAAPGYVVSRVHAVDHDEGRYGLV
RYFIAGRNQGRMNGLFDIDHETGEVTLKKPLDREASNKLILFIEARDQDGLAPKVGRCRL
VIHVTDVNDNQPIVSVSYIANHVGDTVYISESSPLKTFFAYVSAKDNDLESNGEVELMIE
TFIPTTRDDVGDDLIKSPDPYSSFVLNDDGMLGVGRALDRETQPRYVIQVTACDLGVNPL
CTNRYIEVILLDENDHTPHFEHDIYNISMMEDTVVGTMVTTITATDGDKSNLPAMRLNHE
NQIVASTNGDVIYSVSGGDGSFSIDPKSGNIMLVRALDREQVSKWKIFVTARDRGEPMTS
SSHCTLIVTVDDVNDNAPVFSNPPNDETTIYATILRDDVITRIQAVDYDEQSDLKYRLLS
EDGVKQNKDINSTFVINSQTGDLRLNMSHEDLKSTLGLHTVTIEARDSGIPMLRSLRQLN
VMVTERAQLPKHVINPPSDVGMGSSSLVIIIAALSAAMLVLIVVVIVIVVRCKRDTKTVR
TYVAKDVKHDDVTGATYPDVTAATYHDVTDRKLNLIVTSDAERSTWGKSHARRPSTNYDT
VSDVTSVSHNVITTSSQYQPTTTSGSVYEKKPTSVTSQTTSQSHHDVDSGRGDSDQDVCV
SDVTFERGYVTNTQPRDHVNRCDEQCLLYGHSDACWMPVNEQDMIHDYPNTSSPFDKPSY
PPTNLPPIPEKSPIQSYWSHSGSGSNLSSIYSTKPSFPREEYARHLTTSFRINSSTDSNT
TGYVTEHDVL
Nucleotide sequence
Length: 3,228
>KH2012:KH.C1.1100.v1.A.SL2-1
AATCTTAAGCAATCTTTGTTGATATTTTCCTCATTCATTGGAATATTTTACCAACGTAAA
CAACAAGAACAAGAACACAAGTAAAGGACAATGGTCGCTTATCGAGCTTTGGCGCCTTGG
GTCGTCACGGTCGTTGTGATGTCATCATGTTGCATTATGACGTCATACGCGTCATCCACC
ACAGTAAGGAAGAGCGTCTACCTTCGCGAGGATTCGAACTCAGGAACAATAGTCGAGGAA
ATATCCGACGTACTTAACATGAGGATCTCAAGAAACCGAGGACAAAATTTCCAACAATTA
AGTCAGAAGTTAATTACGTCGAACCCGAATCCGAGTCCCGAGGAATTAGTTAGTTGGTTG
TCGCTTGACCGAGTAACAGGGCGGGTAACGTTGGCTCGTCGGTTGGATAGAGAGGAGTTA
TGTGTTGATTCCGTTGTATGCTCCATAAGAATGCAGGTATTTACCGAGATTTACGTCCAC
ACGTCGTTCCGCATGGTTTACCTTGATGTCGTCATAATCGACGTAAATGAGCACGTTCCA
GAATTCTCGTCCCGATATATTTTGATCAATGTTAGCGAAGACGCGAGACCTGGTGACGTC
ATATCACTGGATAAATACCAAGCAGTGGACCGTGACGCAGGCAACAACTCTATACTAACT
TACACATTGAGTCAAAGCAACGAGTTTCGTCTTGGTCAATATTTTGACGAGACAGGATCC
CAACATCTTCATATTGAAGTAGTAAAGCAACTTGATTACGAAAAGAAACAACTTTACCGC
CTCACCCTTACAGCACGTGACCATGGAGAGCCTTCATTGACCAATCATGTGCCTCTACAG
GTCAGAGTGACGGATGTCAATGATAATGAGCCATTGTTCGACCGGAAGGAATATTCGATT
GTCGTAAGAGAAGACGCTGCACCTGGGTACGTAGTGTCACGTGTGCACGCAGTGGACCAT
GACGAGGGTAGATACGGCTTGGTTCGTTATTTCATCGCTGGTAGGAACCAGGGGAGAATG
AATGGTTTGTTTGACATCGACCATGAGACAGGGGAAGTGACGTTGAAGAAACCACTGGAC
CGTGAAGCGTCAAACAAATTGATCTTGTTTATCGAGGCACGTGACCAAGATGGTTTGGCG
CCAAAAGTTGGAAGGTGTCGATTGGTTATCCACGTGACTGACGTCAACGATAATCAACCA
ATAGTGAGCGTGAGTTATATTGCTAACCACGTGGGCGATACAGTTTACATCTCTGAGTCT
TCGCCTTTGAAAACATTCTTCGCTTACGTCAGCGCTAAAGACAATGACCTTGAATCTAAT
GGTGAAGTCGAATTAATGATCGAAACATTTATCCCAACTACCCGTGATGACGTGGGTGAT
GACCTCATCAAGTCACCTGACCCATACAGTAGCTTTGTATTGAACGACGATGGTATGTTG
GGGGTCGGTAGAGCGTTGGACCGGGAAACACAACCACGATATGTCATCCAAGTTACCGCG
TGTGATCTTGGTGTCAATCCTCTGTGCACTAACCGATACATCGAAGTAATATTACTCGAC
GAAAACGACCACACTCCCCACTTTGAACACGATATATATAACATTTCTATGATGGAGGAC
ACGGTGGTGGGTACAATGGTAACGACGATCACAGCCACAGATGGTGATAAAAGTAATCTG
CCTGCTATGCGGCTCAACCATGAGAACCAGATAGTAGCATCCACCAATGGTGACGTCATA
TACTCGGTATCTGGAGGAGATGGTTCGTTTTCCATCGATCCAAAGAGTGGGAATATCATG
TTGGTGAGGGCGTTGGATCGGGAGCAAGTGTCGAAGTGGAAGATTTTCGTGACTGCGCGC
GATCGCGGTGAGCCTATGACGTCATCGAGTCATTGTACGTTGATTGTGACGGTTGATGAC
GTCAATGACAACGCACCAGTATTCAGCAACCCCCCTAACGACGAAACAACTATCTACGCA
ACAATACTACGTGATGATGTCATAACACGTATTCAGGCGGTTGATTACGACGAACAAAGC
GACTTGAAGTACCGATTGTTGAGCGAGGATGGGGTGAAACAGAATAAAGATATCAATTCT
ACTTTTGTTATTAATTCACAAACCGGTGACCTGAGATTGAATATGAGTCACGAGGATTTA
AAGTCAACATTGGGGTTGCATACTGTTACTATTGAGGCAAGAGACAGTGGCATCCCGATG
TTACGAAGTCTTCGCCAACTTAACGTGATGGTTACCGAACGTGCCCAACTGCCCAAACAC
GTCATAAACCCCCCTAGTGACGTAGGCATGGGCAGTTCATCATTAGTGATCATCATTGCA
GCGTTATCGGCCGCCATGTTGGTTCTTATCGTGGTCGTTATAGTGATTGTGGTACGGTGT
AAAAGAGATACCAAGACTGTTCGAACATACGTAGCCAAGGATGTTAAACATGATGACGTC
ACAGGAGCTACGTATCCTGACGTCACAGCAGCTACATATCATGACGTCACTGACCGGAAG
TTAAACTTGATCGTAACCAGTGATGCGGAACGATCAACTTGGGGGAAGTCCCATGCTAGG
AGGCCATCCACTAACTACGACACTGTTAGTGACGTCACCAGCGTATCGCACAACGTCATT
ACTACGTCATCACAATACCAACCCACGACCACTAGCGGCAGTGTTTACGAGAAGAAACCA
ACGTCTGTTACGTCACAAACCACGTCACAATCCCATCATGACGTAGACAGTGGACGAGGC
GACAGCGATCAAGATGTTTGCGTTAGTGACGTCACATTCGAACGAGGTTACGTAACAAAC
ACCCAGCCACGTGATCACGTTAACCGTTGTGACGAACAATGCCTATTGTATGGTCATAGT
GACGCGTGTTGGATGCCTGTCAACGAACAAGACATGATCCATGATTACCCAAACACCTCA
AGCCCCTTCGACAAACCATCTTACCCCCCAACCAACTTGCCCCCGATACCGGAGAAGTCA
CCCATCCAAAGTTATTGGTCCCACAGTGGGTCAGGTTCGAACCTTAGCTCGATATACTCA
ACCAAACCAAGCTTCCCACGAGAGGAATACGCAAGACACTTAACTACGAGCTTTAGAATT
AATTCATCAACCGACAGTAATACGACTGGTTACGTCACAGAGCATGACGTATTATAAGTT
CATTGTTACGTCACGTATTTATTTCCCGCCCACTGTGTCTTCAATAAA
| SMART |
Cadherin (IPR002126) - T[37-152] 0.26 - T[178-263] 1.7E-20 - T[287-372] 8.7E-25 - T[402-498] 2.3E-12 - T[535-618] 5.8E-20 - T[643-731] 0.012 |
| Pfam |
Cadherin_N (IPR013164) - T[89-128] 2.1E-6 |
| PRINTS |
Cadherin (IPR002126) - T[90-109] 8.5E-30 - T[265-294] 8.5E-30 - T[338-350] 8.5E-30 - T[353-372] 8.5E-30 - T[498-511] 8.5E-30 - T[567-593] 8.5E-30 - T[602-619] 8.5E-30 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[148-265] 8.14E-20 - T[253-378] 8.28E-29 - T[367-492] 1.01E-13 - T[488-622] 3.28E-26 - T[613-724] 3.71E-13 |
| Pfam |
Cadherin (IPR002126) - T[161-256] 3.1E-13 - T[270-365] 6.1E-19 - T[505-610] 4.0E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[253-263] . - T[362-372] . - T[608-618] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDGH_HUMAN | 28.63 % | 259 | 1.16E-72 |
| PCD18_HUMAN | 27.283 % | 306 | 8.01E-88 |
| PCD17_HUMAN | 29.293 % | 267 | 2.19E-74 |