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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S4...'
  2. Transcript 'Mooccu.CG.ELv1_2.S58...'
  3. Transcript 'Cisavi.CG.ENS81.R27....'
  4. Transcript 'KH2012:KH.C3.199.v2....'
  5. Transcript 'KH2012:KH.C11.146.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.146.v1.A.ND2-1

Possible name(s)

PUF60; U2AF2

Location

KhC11 [738,766 / 742,251]

Sequences

Amino acid sequence

Length: 488

>KH.C11.146.v1.A.ND2-1
LNIWLNMAELGVNNYQDPSFTKQDPGYNNGDGQYGPTEPEPRSRDDKRDRDRDRGSSGRH
RDRKRSRDRDRKKRSRSRSRGRRHRSKSRERKRRSRSRERPEKKPKKAYKYWDVPPVGYE
HVTPLQYKAMQAAGQIPLMATSQTMGSITAEATLQVPVAGSQMTRQARRLYVGNIPFGVT
EDAMMDFFNNQMQIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMN
QSLKIRRPSDYKPLPGSLEQPAIHLPGVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTS
FGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRASIGAKN
NPHGAIMAPVTLQIPGMAHATGAGPATTVLCLMNMVLPEELTDDEEYEEIMEDVKDECGK
LGSVVSLEIPRPGPGLTEADGVGKIYVEFANHLDTQKAAQALSGRKFSNRVVVTSFFDPE
RYHHRQFS

Nucleotide sequence

Length: 2,264

>KH2012:KH.C11.146.v1.A.ND2-1
GTTTTATGTTAGTTAATTAGTGAAATTGTGCAGTAAAGATGTTTTTACTGGTATTTTTTA
CCAAAAGAGTCTTAGTTTTATCTAATTTAGTCTTAATTAAGTTAATCAAGTTAAGGCACA
AAGGAGCTGTTTAATGTGTTAGCATTAATTTGTTAAAATAAACTGTAAACCGTATTTGCG
GATCTTTTTTAACGATTATAATATTACAGAAGTCACCTACGATCATTCTTCTTGCTCATT
ATTACGTTTTTTTTGTGTGTCAGTAATAATACGACCTGCATCTAAACTTCCACCTATGTT
AATATTTCACAGGCTAACCACTTATACGACCATTAAACAATAATTTTTATCATTAAAAGT
CAAAACACATTTTACTGACTGAAAAAGTTTGCAACAAATCTTTCAAAGTAATTGGCTTTA
ACTCAATATCTGGTTAAACATGGCTGAATTGGGCGTGAATAATTACCAAGACCCGAGTTT
TACTAAGCAGGACCCCGGGTACAACAATGGTGACGGTCAATATGGTCCCACTGAACCAGA
GCCGCGGTCCCGAGATGATAAACGTGATCGTGACCGAGATCGCGGAAGTTCGGGTAGACA
CCGAGATCGTAAACGGAGCCGTGACCGCGATCGTAAGAAGAGGAGCAGAAGTCGGAGCAG
AGGAAGAAGGCACCGGTCAAAAAGCAGAGAGCGTAAACGAAGATCAAGAAGTCGAGAACG
CCCCGAGAAGAAACCAAAAAAAGCTTACAAATATTGGGACGTGCCACCAGTTGGTTACGA
ACATGTCACACCACTACAATACAAAGCAATGCAGGCAGCGGGTCAAATTCCATTGATGGC
AACTTCTCAAACTATGGGGAGCATTACAGCAGAAGCAACGCTCCAGGTTCCTGTGGCTGG
AAGTCAAATGACACGACAAGCACGTCGTCTTTACGTTGGCAACATCCCCTTCGGTGTCAC
TGAAGACGCTATGATGGATTTCTTCAACAACCAGATGCAGATCGCCGGTCTTGCACAAGC
ACCCGGTCAACCAATTCTCGCAGTGCAGATTAATCTGGATAAAAATTTCGCTTTTCTCGA
GTTCAGGTCAGTTGACGAGACTACACAGGCCTTGGCGTTCGATGGAATCAACTTCATGAA
CCAATCACTGAAGATCCGTCGCCCAAGTGATTACAAACCACTGCCAGGATCCTTGGAGCA
ACCTGCTATTCATCTACCTGGTGTGATATCTACTGTAGTCCAAGATTCTCAGCACAAGAT
GTTTATTGGAGGTTTGCCGAATTATCTTAACGACGATCAAGTGAAGGAGCTGTTGACATC
CTTTGGGCCGCTACGTGCATTTAACTTGGTCAAGGACAGTGCTACTGCTCTATCTAAAGG
GTATGCTTTCGCCGAGTTTGCAGATTATTCCTTGACTGACCAAGCTATTGCCGGCCTTAA
TGGAATGCAACTTGGGGACAAGAAATTGATTGTGCAACGTGCAAGCATCGGTGCAAAGAA
TAATCCACATGGAGCAATTATGGCACCAGTTACACTACAGATTCCCGGCATGGCTCACGC
GACAGGTGCAGGCCCCGCAACAACCGTGTTGTGTTTGATGAACATGGTTCTTCCGGAGGA
GTTGACAGATGACGAGGAATATGAGGAGATCATGGAAGATGTAAAAGATGAGTGCGGAAA
ACTTGGATCTGTTGTCAGTCTTGAGATTCCGCGCCCCGGGCCTGGATTAACAGAAGCTGA
CGGCGTTGGTAAAATTTATGTTGAGTTTGCAAACCATCTCGACACGCAGAAGGCAGCACA
AGCTCTTTCTGGTAGAAAGTTCTCCAACAGAGTTGTGGTGACTTCGTTCTTCGATCCAGA
GCGTTATCACCACCGTCAGTTTAGTTAGAGACGAAAGTAAACAATACTGGAGCAATTTTC
TGTTGAATGGACCTAATTTCGGTTGTACAGCCAACTTATCCATTGACGATTTTTATTTCA
GTTGTCGGAAACTGCCATTTTGAAAAACTTATTAGAATGTCAAAAAAAAATCGTGAATTG
CAACTTTTGGTTAAATAGGCCTAAATTTTTTAATGGTTTTGTAAGTAATTCAAATTGGGC
TGTGAAGTTGCAACGCGATATAACATTAATGTCTGTGTTTCTTGAAATTAGTTTTTAAGC
ACGAGATGATTTTATGCTGTAGTGGAGAATATCAGTAATTCAACTTTCACTCTTGTAATA
AATTTGGTCCCTTTGTTATTTCAAGGTAAATAAAAACAAACGAA

InterProScan

TIGRFAM
U2AF_lg (IPR006529) - T[42-487] 4.6E-145
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[168-252] 1.28E-18 - T[277-366] 6.11E-26 - T[395-481] 6.11E-26
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[168-253] 1.7E-59 - T[254-257] 1.7E-59 - T[278-329] 1.7E-59 - T[330-351] 1.7E-59 - T[384-488] 1.4E-30
ProSiteProfiles
RRM_dom (IPR000504) - T[168-250] 13.243 - T[278-356] 15.971 - T[388-479] 9.149
SMART
RRM_dom (IPR000504) - T[169-246] 3.5E-11 - T[279-352] 5.3E-17 - T[389-475] 1.1
Pfam
RRM_dom (IPR000504) - T[170-243] 3.4E-6 - T[281-349] 1.5E-15 - T[412-472] 4.6E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
U2AF2_HUMAN 70.455 % 531 0