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  1. Transcript 'KH2012:KH.C11.146.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.146.v1.A.SL1-1

Possible name(s)

PUF60; U2AF2

Location

KhC11 [738,766 / 741,939]

Sequences

Amino acid sequence

Length: 488

>KH.C11.146.v1.A.SL1-1
LNIWLNMAELGVNNYQDPSFTKQDPGYNNGDGQYGPTEPEPRSRDDKRDRDRDRGSSGRH
RDRKRSRDRDRKKRSRSRSRGRRHRSKSRERKRRSRSRERPEKKPKKAYKYWDVPPVGYE
HVTPLQYKAMQAAGQIPLMATSQTMGSITAEATLQVPVAGSQMTRQARRLYVGNIPFGVT
EDAMMDFFNNQMQIAGLAQAPGQPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMN
QSLKIRRPSDYKPLPGSLEQPAIHLPGVISTVVQDSQHKMFIGGLPNYLNDDQVKELLTS
FGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGLNGMQLGDKKLIVQRASIGAKN
NPHGAIMAPVTLQIPGMAHATGAGPATTVLCLMNMVLPEELTDDEEYEEIMEDVKDECGK
LGSVVSLEIPRPGPGLTEADGVGKIYVEFANHLDTQKAAQALSGRKFSNRVVVTSFFDPE
RYHHRQFS

Nucleotide sequence

Length: 1,952

>KH2012:KH.C11.146.v1.A.SL1-1
GCTAACCACTTATACGACCATTAAACAATAATTTTTATCATTAAAAGTCAAAACACATTT
TACTGACTGAAAAAGTTTGCAACAAATCTTTCAAAGTAATTGGCTTTAACTCAATATCTG
GTTAAACATGGCTGAATTGGGCGTGAATAATTACCAAGACCCGAGTTTTACTAAGCAGGA
CCCCGGGTACAACAATGGTGACGGTCAATATGGTCCCACTGAACCAGAGCCGCGGTCCCG
AGATGATAAACGTGATCGTGACCGAGATCGCGGAAGTTCGGGTAGACACCGAGATCGTAA
ACGGAGCCGTGACCGCGATCGTAAGAAGAGGAGCAGAAGTCGGAGCAGAGGAAGAAGGCA
CCGGTCAAAAAGCAGAGAGCGTAAACGAAGATCAAGAAGTCGAGAACGCCCCGAGAAGAA
ACCAAAAAAAGCTTACAAATATTGGGACGTGCCACCAGTTGGTTACGAACATGTCACACC
ACTACAATACAAAGCAATGCAGGCAGCGGGTCAAATTCCATTGATGGCAACTTCTCAAAC
TATGGGGAGCATTACAGCAGAAGCAACGCTCCAGGTTCCTGTGGCTGGAAGTCAAATGAC
ACGACAAGCACGTCGTCTTTACGTTGGCAACATCCCCTTCGGTGTCACTGAAGACGCTAT
GATGGATTTCTTCAACAACCAGATGCAGATCGCCGGTCTTGCACAAGCACCCGGTCAACC
AATTCTCGCAGTGCAGATTAATCTGGATAAAAATTTCGCTTTTCTCGAGTTCAGGTCAGT
TGACGAGACTACACAGGCCTTGGCGTTCGATGGAATCAACTTCATGAACCAATCACTGAA
GATCCGTCGCCCAAGTGATTACAAACCACTGCCAGGATCCTTGGAGCAACCTGCTATTCA
TCTACCTGGTGTGATATCTACTGTAGTCCAAGATTCTCAGCACAAGATGTTTATTGGAGG
TTTGCCGAATTATCTTAACGACGATCAAGTGAAGGAGCTGTTGACATCCTTTGGGCCGCT
ACGTGCATTTAACTTGGTCAAGGACAGTGCTACTGCTCTATCTAAAGGGTATGCTTTCGC
CGAGTTTGCAGATTATTCCTTGACTGACCAAGCTATTGCCGGCCTTAATGGAATGCAACT
TGGGGACAAGAAATTGATTGTGCAACGTGCAAGCATCGGTGCAAAGAATAATCCACATGG
AGCAATTATGGCACCAGTTACACTACAGATTCCCGGCATGGCTCACGCGACAGGTGCAGG
CCCCGCAACAACCGTGTTGTGTTTGATGAACATGGTTCTTCCGGAGGAGTTGACAGATGA
CGAGGAATATGAGGAGATCATGGAAGATGTAAAAGATGAGTGCGGAAAACTTGGATCTGT
TGTCAGTCTTGAGATTCCGCGCCCCGGGCCTGGATTAACAGAAGCTGACGGCGTTGGTAA
AATTTATGTTGAGTTTGCAAACCATCTCGACACGCAGAAGGCAGCACAAGCTCTTTCTGG
TAGAAAGTTCTCCAACAGAGTTGTGGTGACTTCGTTCTTCGATCCAGAGCGTTATCACCA
CCGTCAGTTTAGTTAGAGACGAAAGTAAACAATACTGGAGCAATTTTCTGTTGAATGGAC
CTAATTTCGGTTGTACAGCCAACTTATCCATTGACGATTTTTATTTCAGTTGTCGGAAAC
TGCCATTTTGAAAAACTTATTAGAATGTCAAAAAAAAATCGTGAATTGCAACTTTTGGTT
AAATAGGCCTAAATTTTTTAATGGTTTTGTAAGTAATTCAAATTGGGCTGTGAAGTTGCA
ACGCGATATAACATTAATGTCTGTGTTTCTTGAAATTAGTTTTTAAGCACGAGATGATTT
TATGCTGTAGTGGAGAATATCAGTAATTCAACTTTCACTCTTGTAATAAATTTGGTCCCT
TTGTTATTTCAAGGTAAATAAAAACAAACGAA

InterProScan

TIGRFAM
U2AF_lg (IPR006529) - T[42-487] 4.6E-145
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[168-252] 1.28E-18 - T[277-366] 6.11E-26 - T[395-481] 6.11E-26
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[168-253] 1.7E-59 - T[254-257] 1.7E-59 - T[278-329] 1.7E-59 - T[330-351] 1.7E-59 - T[384-488] 1.4E-30
ProSiteProfiles
RRM_dom (IPR000504) - T[168-250] 13.243 - T[278-356] 15.971 - T[388-479] 9.149
SMART
RRM_dom (IPR000504) - T[169-246] 3.5E-11 - T[279-352] 5.3E-17 - T[389-475] 1.1
Pfam
RRM_dom (IPR000504) - T[170-243] 3.4E-6 - T[281-349] 1.5E-15 - T[412-472] 4.6E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
U2AF2_HUMAN 70.455 % 531 0





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