- Transcript 'KH2012:KH.C9.80.v1.A...' >
- Transcript 'KH2012:KH.C1.1161.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1161.v1.A.ND1-1
Possible name(s)
SCN10A; SCN2A; SCN9A
Gene model
Location
KhC1 [8,595,895 / 8,627,151]
Amino acid sequence
Length: 1,955
>KH.C1.1161.v1.A.ND1-1
PYFQTYIVVNDQGSIFRFSKAESLFLFGQESRLRNAAINLFIKPMFSNFIMLVILFNCAC
MVLENPPHWVDDYLEYVFTAIYIAEATVKITARGFVLHSFSYLRDPWNWLDFIVIVSALA
TEILKAIVRSTMLGQIAVLRTFRVLRALKTMSVVPGLRGIVKALLRSIHALKDAVALTVF
CVSVFALIGYQLFHGTLRQKCVLSSNSPVLAPDALYALDKEANFFRQDYIYSITYSISMF
SDMCPLGYGCYEAGGNPDYGYTSFDHFFLAFLTSFRLVALDSWSRLYYLTLHTIGKTYAI
FYIVVVLLGSYYLVNLILAVVYMAYEEQQAVVEEEELGDDLSECDDCASESDVPNSEIDV
ETGRWKMGLITTSLACHEPRQFSNDGNSSATFSPSPFGYKESCRRKRRSVRSHGVQSSDT
CTCSDDSSMYQHGDMQRPKRRRSLSKSRRRRYRRKSPVNLKSLEENKKDKHEDKPSIRLI
VTEIESEAESGHRMLKNKQENHHEKNANFLSVNEALRRGRMSSLSSETSSCNEVCNDCSE
QNNTEKKPCFNPAEYFQTNNNLLSPVNPSPVKTTGDPAADDINIDEDQTIAVISEDGKYY
EFKQMNYIYLTLSCSSQQFKRPLFTLVSDISPTSRRARWKLKNKKMTDRYQKFSRAFVNL
FCKWRCCPAGWSKIQRKVRRIVLNPFTDLLITLCIALNTLFMSLEQHPMEAWFAKILDNA
NVFFTIVFTVEMLMKIIGLSPYTYFNERWNVFDAVVVLFSLLELLLNSTQGLSVFRAFRL
MRILKLAKQWPTLNKLLRIIGKTLGQLWHLTLVLFLVLFIFAVVGMQLLRESYISHYLEH
NQGKLPRWNFIDFPHSFMVVFRIQCGEWVENMFTCLNVAPPGICIPLFILVYIIGNLVIL
NLFLALLLNSFSGDVLQQTTSENSSISEAFRQFVAWARKQRSRIQTIPFNVRSLNLFVFS
DETDPMLQSPKPHTNGNASHDKQSGTNHKTNHEPCNDNTEVSVLSLNGSLKEPSKSRNDS
VCAIVQESNDLLNNPNKETCKEKRSRSVTPEGRCSSRVSRRRNSMTSRASESSSIPLSPT
SSSHRRRKASVSARDRYRGIRSSVGEGSGGEGIKENGREDKLTNKNHNQVQDEDKTESVE
EENEVNETENEKSKLQPCFSCWTREPLSGPWFEMREFMHKIIIHRYFENIVIFCILLSTV
TLAMEDIHIDKRPAMKKVVHIIDIFCCIFFTVEMLMKWIGKGLRSYFTNPWCCLDFFIVL
VSLVNIFMASNQRADFSALRALRTFRALRPLRALSRFQGMKIVVDALIRAVPSITHVFFI
CMIFWLIFSILGVNIFGGRFGRCVSLMTGDIMPNPRPEDIVGNNTIYDKCLVNNTLMNTT
LINWQIPSVNFDSAPRGLLALLQIATFTGWIEIMGSAIDITGIESQPRYENSFYNYLYFC
VFIIFGAFFSLNLFIGVIIDNFNQQKIKTKGGEDGVFLTDEQRRYYNAMKRMASKTPKKP
IPRPNSRFANKIYDIVTDRKFEIAVMGLIMLNLVVMAIEHHDMSPEMYKLLQNFNLGFIC
VFLLEAILKLIGLRLYYFTVPWNVFDILVVVVSLIASGLHDVMTQYFVQPTIFRIIRLFR
VTRILRLIREAKGIRTLLFALMMSLPALFNIGSLLFLLMFIYAIIGMSQFPYIQKVAGVD
DLLNFETFPNAFLVLFQISTSEGWDTFIDPVLRDREPYCDESPADGSPSNCGNATVGVIY
FVTYVMITFLIVVNMYIAIILENFEVATRESAEPLTADDFEQFFEVWQRFDDRLTQFVTY
EQLKLLLHQLDFPLRVALPNTAFISQAHMKVTLDGRIHCLEVIITLIKKVLGDSPELNNL
KDSMLQSFKLKCPAKESLEDQETIDSEEFTVQLRAVIIIQRAYREYRLRIEELEYSEEGD
MTDANSSESSSEPEATNPNGHTGAPPAEISIEPPG
Nucleotide sequence
Length: 6,201
>KH2012:KH.C1.1161.v1.A.ND1-1
CCATATTTTCAGACCTACATTGTTGTGAACGATCAAGGTTCAATCTTCCGCTTCAGTAAG
GCCGAGTCCCTTTTTCTATTCGGCCAGGAAAGTCGCCTCCGTAACGCCGCCATCAATCTC
TTCATTAAGCCGATGTTTTCCAATTTCATAATGCTCGTCATCCTGTTTAACTGCGCATGC
ATGGTGCTGGAAAACCCGCCGCATTGGGTAGACGACTACTTAGAATACGTTTTCACCGCC
ATCTACATAGCAGAGGCCACAGTTAAGATCACGGCAAGAGGTTTCGTCCTTCATAGTTTC
TCATATCTACGAGACCCCTGGAATTGGCTCGACTTTATTGTCATCGTATCAGCGCTTGCC
ACGGAAATCCTAAAAGCCATCGTTCGCTCCACAATGCTGGGGCAGATTGCGGTTCTAAGG
ACGTTTCGTGTGTTGCGGGCGTTAAAGACAATGTCAGTAGTTCCCGGTTTGCGGGGGATC
GTGAAAGCATTACTTCGATCCATCCACGCACTGAAAGACGCCGTCGCCCTAACAGTGTTC
TGCGTCTCAGTGTTCGCGCTGATCGGGTACCAGCTCTTTCACGGCACCTTGCGGCAGAAG
TGTGTTTTGAGCTCGAACTCCCCAGTCCTTGCGCCAGATGCTTTATACGCACTTGATAAA
GAAGCGAACTTCTTCAGACAAGATTACATTTATTCAATAACTTACTCAATAAGCATGTTT
AGTGATATGTGTCCACTGGGTTACGGATGTTACGAAGCCGGCGGGAACCCCGATTATGGT
TACACGAGTTTCGATCATTTCTTCCTCGCATTTCTTACATCGTTTCGTCTTGTTGCGCTC
GATTCGTGGAGCAGATTGTACTACTTGACACTTCACACCATTGGAAAGACGTATGCCATA
TTCTATATAGTAGTTGTGCTTCTTGGTTCTTATTACTTGGTCAACCTTATCCTTGCTGTT
GTATATATGGCTTATGAGGAACAACAGGCTGTTGTGGAAGAAGAAGAATTGGGAGATGAT
TTGAGCGAATGTGATGATTGCGCGAGTGAGAGCGACGTGCCTAACAGTGAGATAGACGTT
GAAACAGGCCGCTGGAAGATGGGTCTAATCACAACTTCGCTGGCTTGCCATGAACCTCGA
CAGTTTTCCAACGACGGGAATTCGAGCGCAACATTTTCACCGTCGCCGTTTGGTTATAAA
GAGTCGTGTCGTAGGAAGAGACGAAGTGTTCGTTCCCATGGCGTGCAGAGTTCTGACACT
TGTACTTGCTCCGATGACAGTTCAATGTACCAACATGGAGACATGCAACGACCGAAGCGA
CGACGCTCTCTCAGTAAAAGCAGGCGGCGAAGATACCGAAGAAAATCGCCGGTGAACCTA
AAATCTTTGGAGGAAAATAAAAAGGACAAACATGAGGACAAACCTTCGATTCGGTTAATT
GTGACTGAGATTGAATCTGAGGCAGAAAGTGGCCATCGCATGTTAAAGAATAAGCAGGAG
AATCATCACGAAAAAAATGCAAACTTTCTTTCAGTAAATGAGGCATTACGCAGAGGCCGT
ATGTCTTCGTTATCGAGTGAAACATCATCTTGTAATGAAGTTTGCAACGATTGTTCAGAG
CAGAACAATACGGAGAAAAAGCCATGTTTTAACCCAGCTGAGTATTTCCAAACCAACAAC
AACCTGCTATCACCTGTCAATCCATCGCCTGTCAAAACAACTGGTGATCCTGCTGCTGAT
GACATCAATATCGATGAAGATCAAACGATTGCTGTGATATCAGAGGATGGAAAATACTAT
GAGTTCAAACAAATGAATTATATTTATTTAACTTTAAGTTGTTCAAGCCAACAGTTTAAA
CGACCTTTATTTACCTTAGTTTCCGACATCTCCCCGACATCAAGACGAGCCAGGTGGAAG
CTGAAGAACAAAAAGATGACGGATCGTTACCAGAAGTTTTCGAGGGCGTTTGTGAATTTG
TTCTGCAAATGGAGGTGTTGTCCTGCTGGGTGGTCGAAAATCCAGCGTAAAGTTCGCCGA
ATTGTGCTCAACCCGTTCACTGACCTCCTTATAACATTATGCATCGCCCTAAATACTTTG
TTCATGTCATTGGAGCAACACCCGATGGAGGCTTGGTTCGCCAAGATCTTGGACAACGCT
AATGTGTTTTTCACGATTGTCTTCACTGTAGAGATGCTAATGAAGATCATAGGGTTAAGT
CCGTACACTTATTTCAATGAGAGATGGAATGTGTTCGATGCAGTCGTCGTGCTTTTCAGT
TTGCTTGAACTTTTGCTTAACTCAACTCAAGGTCTCTCAGTGTTCAGAGCGTTTCGATTG
ATGCGAATATTGAAGCTTGCTAAACAGTGGCCAACCTTGAACAAACTGTTGAGGATAATC
GGTAAAACTTTGGGTCAACTTTGGCACCTGACTCTTGTCTTGTTTCTTGTTCTTTTCATC
TTTGCTGTGGTAGGGATGCAGTTACTCAGGGAATCTTACATCTCCCATTACTTAGAACAC
AATCAGGGTAAACTACCAAGGTGGAATTTCATTGATTTTCCCCACTCATTCATGGTGGTG
TTCCGTATACAATGTGGAGAATGGGTTGAAAATATGTTTACTTGCCTCAATGTTGCCCCT
CCTGGTATTTGTATCCCTCTGTTTATACTTGTGTATATCATTGGGAACTTGGTGATTCTC
AACCTTTTCCTTGCTTTGCTTCTCAACTCGTTCAGTGGAGACGTTTTACAGCAAACCACC
AGCGAAAACAGCAGCATTTCTGAAGCGTTCCGACAGTTTGTGGCTTGGGCACGAAAGCAA
AGAAGCAGAATACAAACTATACCTTTTAATGTAAGAAGTCTAAACCTTTTTGTTTTTAGT
GATGAAACTGACCCAATGTTACAATCACCCAAACCCCATACCAATGGAAATGCTAGCCAT
GATAAACAAAGTGGAACTAACCACAAAACCAACCACGAGCCATGCAATGATAACACTGAA
GTATCGGTTCTATCACTCAACGGATCTTTAAAGGAACCAAGCAAGAGCCGTAACGACAGT
GTGTGTGCCATTGTGCAAGAATCTAATGATTTACTCAACAACCCAAACAAAGAGACTTGT
AAAGAGAAACGGAGTCGTAGCGTGACCCCTGAAGGCCGGTGCTCATCCAGGGTTTCTCGG
CGTCGTAACTCAATGACGTCGCGCGCCTCGGAGTCGAGTTCTATCCCTCTATCTCCAACT
TCAAGCTCCCACCGTCGAAGAAAAGCTTCCGTAAGCGCTAGAGACCGGTACAGAGGGATC
CGAAGCAGTGTGGGTGAAGGATCAGGGGGCGAAGGGATAAAAGAAAATGGAAGAGAGGAT
AAATTAACAAATAAAAATCATAACCAAGTTCAAGATGAAGATAAAACTGAATCAGTGGAA
GAAGAGAATGAAGTAAATGAAACTGAAAATGAAAAGAGTAAACTCCAGCCCTGCTTTTCA
TGCTGGACAAGGGAACCTCTGAGCGGTCCATGGTTTGAAATGCGGGAGTTTATGCACAAG
ATAATTATTCATCGATATTTTGAAAATATCGTCATTTTCTGCATCCTACTCAGTACTGTG
ACTCTGGCAATGGAAGACATCCATATTGACAAAAGGCCAGCCATGAAAAAGGTGGTTCAC
ATAATCGATATATTTTGCTGCATATTTTTCACGGTTGAAATGCTCATGAAATGGATTGGA
AAAGGACTTCGTTCTTATTTCACTAATCCTTGGTGTTGCTTGGACTTCTTTATAGTTCTG
GTTTCCCTGGTGAACATTTTCATGGCATCAAACCAACGTGCAGACTTCAGTGCACTTCGT
GCATTAAGAACATTTCGTGCACTGCGGCCCCTACGTGCACTTTCACGGTTCCAAGGCATG
AAGATAGTGGTGGATGCGTTGATAAGAGCCGTGCCTTCTATAACCCACGTGTTCTTCATA
TGCATGATATTCTGGCTCATTTTCAGTATTCTCGGGGTAAATATCTTTGGAGGTCGTTTC
GGCCGATGTGTTTCTCTAATGACCGGTGACATCATGCCCAATCCAAGACCCGAAGATATT
GTTGGAAACAATACGATCTATGACAAATGTTTGGTTAACAATACCCTGATGAACACCACC
TTAATCAACTGGCAGATACCAAGCGTCAACTTTGACAGCGCCCCCCGTGGATTGCTTGCG
CTGCTGCAGATTGCCACCTTCACTGGTTGGATTGAGATCATGGGTTCGGCAATCGACATC
ACAGGCATCGAGTCGCAACCTCGTTACGAGAATTCCTTTTACAATTATCTTTACTTCTGC
GTCTTCATTATATTCGGAGCATTTTTCTCACTTAATTTATTCATTGGTGTGATCATTGAT
AACTTCAACCAACAGAAGATTAAGACTAAAGGTGGAGAAGATGGCGTATTCTTAACTGAC
GAACAGCGGAGATATTACAACGCAATGAAGAGAATGGCCTCAAAAACTCCCAAGAAACCA
ATACCAAGACCAAACAGTCGCTTTGCCAACAAGATTTACGACATAGTGACCGATCGCAAG
TTTGAGATTGCAGTGATGGGATTGATCATGTTAAACCTGGTTGTCATGGCGATCGAGCAC
CATGACATGTCACCCGAAATGTACAAGCTCTTGCAGAACTTTAACCTTGGATTTATATGT
GTTTTCTTGTTAGAAGCAATTCTGAAACTGATTGGTCTGCGTCTCTATTACTTTACGGTT
CCATGGAATGTGTTTGACATTCTGGTTGTCGTAGTTTCGCTTATCGCAAGCGGATTACAC
GACGTGATGACGCAATACTTCGTACAACCGACAATATTCAGAATTATTCGTCTCTTCAGA
GTCACACGGATCTTACGACTCATTAGAGAAGCAAAGGGTATACGAACTCTTCTCTTTGCG
TTGATGATGTCACTTCCTGCCCTCTTTAACATTGGAAGCCTCTTATTCCTCCTCATGTTT
ATTTACGCCATCATCGGGATGTCTCAGTTCCCTTACATACAGAAAGTAGCAGGCGTGGAC
GACCTTCTCAACTTTGAGACTTTTCCAAACGCTTTCTTGGTTCTTTTCCAGATATCAACA
TCTGAGGGTTGGGATACTTTCATAGACCCTGTGTTAAGGGATAGAGAACCTTACTGTGAT
GAGTCCCCTGCCGATGGCTCACCAAGCAACTGTGGAAATGCTACAGTGGGTGTGATATAC
TTTGTGACATACGTGATGATCACCTTCCTGATAGTAGTGAACATGTACATCGCGATTATC
TTGGAAAACTTTGAGGTCGCAACACGGGAGAGCGCTGAACCATTGACGGCTGATGATTTT
GAGCAATTCTTCGAGGTGTGGCAGAGGTTTGATGACAGGCTTACACAGTTTGTCACATAC
GAGCAACTCAAGTTATTACTCCACCAACTAGACTTTCCACTACGTGTTGCGCTTCCTAAC
ACAGCGTTTATATCACAAGCTCATATGAAAGTTACTCTGGATGGGAGGATACATTGTCTT
GAAGTGATCATCACACTTATTAAAAAGGTGCTGGGAGATTCACCAGAGTTGAACAACCTT
AAGGACTCAATGCTCCAGTCGTTTAAACTGAAATGCCCGGCCAAGGAGTCGTTAGAGGAC
CAGGAGACAATAGATTCAGAGGAGTTTACAGTTCAACTAAGAGCTGTTATCATTATTCAG
AGAGCGTATCGCGAATACAGGTTACGAATAGAGGAACTTGAATATTCAGAAGAAGGTGAC
ATGACGGATGCAAATAGTTCGGAATCGAGTAGTGAACCAGAGGCCACCAATCCTAATGGT
CATACAGGTGCTCCACCAGCAGAAATATCAATTGAACCCCCAGGATGAAAAGTTCCAACT
TCGTCATTTTGATTTGATGACTTGAAAATTTAAATTATCTCGTCGCAAACGCGAATTTAT
GAGAAGATTTAGACCAGGGTAGAAAAAGGGGTGACTTTCTACAAAAACTTTTGTTTTTTC
CTTTAATTTATATCGAATTTATTTCGAATGTATTGTGCGATCATATATTTCATTTTTTAA
CAAAGTTGTTTTTCTTCGTCAGTTCAAATGTTTATTTCAGTGTTTGTTTCAGCGTAATTC
ACTGCAGTTACACATGCTTACCTTCTCACTGTACTTGGAGCATATTAATACAAACCACAT
GCTGTTACTGCGCAGCTGTGC
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[36-155] 5.8E-23 - T[674-791] 6.8E-31 - T[1174-1294] 5.3E-31 - T[1509-1631] 2.6E-36 |
| Pfam |
Ion_trans_dom (IPR005821) - T[44-330] 2.2E-63 - T[685-912] 2.6E-50 - T[1184-1468] 1.2E-60 - T[1521-1771] 4.8E-52 |
| PRINTS |
Na_channel_asu (IPR001696) - T[1743-1762] 4.2E-11 - T[1778-1791] 4.2E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SCN2A_HUMAN | 43.576 % | 1004 | 0 |
| SCNAA_HUMAN | 42.118 % | 974 | 0 |
| SCN9A_HUMAN | 43.075 % | 767 | 0 |