- Region 'REG00000324' >
- Transcript 'KH2012:KH.C11.196.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.196.v1.A.SL1-1
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
KhC11 [698,291 / 703,848]
Amino acid sequence
Length: 540
>KH.C11.196.v1.A.SL1-1
YLSIYTGHHCLSLFITVGMTNDTPPSSTQYMKSIPEHIPHKPAAGFYRETIKCYSPQMVS
YPPHPAPYTAVVPPQVYVHTYPSAHIRNSMHYYSPQHAVYINTTPYNGSMVTVRGMAHPN
NTSSHYQPRSENLSNGCEETRLKCDSKSERFLNTTSRESRYDSADSGIGESTSSVTSSWD
CDDTSSNSSNENGRNLTQECENEDSEHYWTISDDDQYWGIVGQQVPGYYVTNAIAKQIEY
YLSDAYLMKDKYLLRQIRCKKDGYVSIKLITSFKKVKKLTRDWAVVRSAIVRLSTTVVVS
SEGLRIRRRANLSENLRKPRQLTSVLAIRLPSEYNSVEKVTSLFALFGEIGFVRLLRSDK
EVPCDLKNYATQVYDIGKSLCAVVDFDQSEDALASVRILKHLLQNKDDYDVIKEQENINE
DQLEKYKQGIKDLSSLAGTRVALLGPRVKRTLYRQDRTQDVTNFPDDSEVPCPVKDNTEL
KVDYDTTNKVDVTSKNSRGPRLCGRRITGTSLRHNSCSVTRQPRGPDHASPGFTTIVTRI
Nucleotide sequence
Length: 1,792
>KH2012:KH.C11.196.v1.A.SL1-1
ATACCTCAGCATATATACAGGTCATCACTGTTTAAGTTTATTTATCACTGTCGGTATGAC
AAATGACACACCCCCCTCCAGTACTCAATACATGAAGTCGATACCGGAACACATACCCCA
CAAACCTGCAGCTGGTTTCTACAGAGAAACAATTAAGTGTTATTCCCCACAAATGGTGTC
ATACCCACCCCACCCAGCTCCATATACAGCAGTTGTTCCACCACAAGTTTACGTTCACAC
TTATCCTTCAGCTCATATTCGAAACTCCATGCATTACTATTCCCCACAACATGCTGTGTA
TATTAACACAACACCATATAATGGTAGCATGGTAACTGTACGTGGCATGGCACACCCAAA
TAACACTTCATCTCATTACCAACCAAGAAGTGAAAACTTATCTAACGGTTGCGAAGAAAC
TCGTTTGAAATGCGATTCAAAAAGTGAACGATTCCTAAACACTACCAGCCGCGAATCGAG
GTACGACAGCGCCGACAGTGGAATCGGCGAATCCACATCTTCTGTGACGTCATCATGGGA
TTGTGACGACACAAGTTCTAATTCTTCCAATGAAAATGGAAGAAACTTAACTCAAGAGTG
CGAAAATGAGGATAGTGAACATTATTGGACAATTAGTGACGACGACCAATATTGGGGCAT
TGTTGGTCAACAAGTGCCCGGTTATTACGTCACAAACGCCATTGCGAAACAAATCGAATA
TTATTTGTCGGATGCTTATCTCATGAAAGACAAATATTTGTTACGTCAGATCCGGTGCAA
AAAAGATGGTTACGTCAGTATCAAGCTTATTACGTCATTTAAAAAGGTTAAAAAATTGAC
ACGTGATTGGGCCGTCGTACGTAGCGCCATCGTGCGACTTTCTACAACGGTCGTTGTGAG
TTCGGAAGGACTTCGGATCCGAAGGCGCGCGAATCTTTCCGAAAATCTCCGGAAACCTCG
ACAACTGACAAGCGTTCTGGCAATTCGATTACCTTCTGAATACAATTCCGTGGAGAAAGT
GACGTCATTATTCGCATTGTTTGGTGAGATTGGGTTTGTGAGATTGTTAAGAAGCGATAA
AGAGGTTCCTTGTGATCTAAAAAATTATGCTACACAGGTTTATGATATTGGCAAATCCTT
GTGCGCTGTGGTAGATTTCGACCAATCAGAAGACGCGTTGGCATCGGTTCGAATTCTGAA
ACACCTTCTGCAAAACAAGGACGATTATGACGTCATAAAGGAACAAGAGAATATAAACGA
AGATCAACTTGAAAAATATAAACAAGGAATAAAAGATCTGTCTTCACTTGCCGGTACGAG
GGTGGCACTTCTTGGTCCCCGAGTAAAAAGGACTCTCTACCGCCAAGACCGGACACAAGA
CGTCACGAACTTTCCCGACGATAGTGAAGTCCCTTGTCCAGTGAAAGATAATACAGAACT
GAAGGTTGATTATGACACAACAAACAAAGTCGACGTCACATCGAAAAATTCGCGAGGACC
GCGACTTTGTGGGAGGAGAATAACAGGGACATCGTTACGTCATAATAGTTGTAGTGTAAC
GCGACAACCGAGAGGGCCCGACCATGCATCGCCAGGATTTACTACGATTGTGACGAGAAT
TTAAAACTTGTTTTTTTATTAGAATTAACTTTTGGCCAACTGCCAAAATTGCAATAAGTA
ATCGATGCAAATAACTCACCGTGTAATGACGTCTTGATCGTGTATTGTAAATATAACTCG
CATTGACTTTTTATATTTGTGCCTCAATTTACCCATTATATACCACACACAC
| ProSiteProfiles |
La_HTH (IPR006630) - T[224-316] 20.661 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[225-313] 1.09E-20 |
| SMART |
La_HTH (IPR006630) - T[228-309] 1.8E-24 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[229-317] 4.6E-23 |
| Pfam |
La_HTH (IPR006630) - T[234-290] 3.3E-19 |
| PRINTS |
Lupus_La (IPR002344) - T[237-254] 6.4E-5 - T[263-278] 6.4E-5 - T[295-308] 6.4E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 28.517 % | 114 | 3.81E-27 |