- Clone 'ma212n08' >
- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'Mooccu.CG.ELv1_2.S46...' >
- Transcript 'KH2012:KH.C14.172.v1...' >
- Transcript 'KH2012:KH.C11.196.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.196.v1.A.SL2-1
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
KhC11 [698,291 / 703,988]
Amino acid sequence
Length: 554
>KH.C11.196.v1.A.SL2-1
YVTVMFKYLEIFLRYLSIYTGHHCLSLFITVGMTNDTPPSSTQYMKSIPEHIPHKPAAGF
YRETIKCYSPQMVSYPPHPAPYTAVVPPQVYVHTYPSAHIRNSMHYYSPQHAVYINTTPY
NGSMVTVRGMAHPNNTSSHYQPRSENLSNGCEETRLKCDSKSERFLNTTSRESRYDSADS
GIGESTSSVTSSWDCDDTSSNSSNENGRNLTQECENEDSEHYWTISDDDQYWGIVGQQVP
GYYVTNAIAKQIEYYLSDAYLMKDKYLLRQIRCKKDGYVSIKLITSFKKVKKLTRDWAVV
RSAIVRLSTTVVVSSEGLRIRRRANLSENLRKPRQLTSVLAIRLPSEYNSVEKVTSLFAL
FGEIGFVRLLRSDKEVPCDLKNYATQVYDIGKSLCAVVDFDQSEDALASVRILKHLLQNK
DDYDVIKEQENINEDQLEKYKQGIKDLSSLAGTRVALLGPRVKRTLYRQDRTQDVTNFPD
DSEVPCPVKDNTELKVDYDTTNKVDVTSKNSRGPRLCGRRITGTSLRHNSCSVTRQPRGP
DHASPGFTTIVTRI
Nucleotide sequence
Length: 1,932
>KH2012:KH.C11.196.v1.A.SL2-1
GCATAATGTAAATAATCTTTTAGCGGCCACATACCAGATATAGGCCATTCAAAGATTATG
GCAAAAACGTTATTTAATTTCTTACGAAAAAAGGCCTAATACGTGACCGTAATGTTTAAA
TACTTGGAAATATTTCTCAGATACCTCAGCATATATACAGGTCATCACTGTTTAAGTTTA
TTTATCACTGTCGGTATGACAAATGACACACCCCCCTCCAGTACTCAATACATGAAGTCG
ATACCGGAACACATACCCCACAAACCTGCAGCTGGTTTCTACAGAGAAACAATTAAGTGT
TATTCCCCACAAATGGTGTCATACCCACCCCACCCAGCTCCATATACAGCAGTTGTTCCA
CCACAAGTTTACGTTCACACTTATCCTTCAGCTCATATTCGAAACTCCATGCATTACTAT
TCCCCACAACATGCTGTGTATATTAACACAACACCATATAATGGTAGCATGGTAACTGTA
CGTGGCATGGCACACCCAAATAACACTTCATCTCATTACCAACCAAGAAGTGAAAACTTA
TCTAACGGTTGCGAAGAAACTCGTTTGAAATGCGATTCAAAAAGTGAACGATTCCTAAAC
ACTACCAGCCGCGAATCGAGGTACGACAGCGCCGACAGTGGAATCGGCGAATCCACATCT
TCTGTGACGTCATCATGGGATTGTGACGACACAAGTTCTAATTCTTCCAATGAAAATGGA
AGAAACTTAACTCAAGAGTGCGAAAATGAGGATAGTGAACATTATTGGACAATTAGTGAC
GACGACCAATATTGGGGCATTGTTGGTCAACAAGTGCCCGGTTATTACGTCACAAACGCC
ATTGCGAAACAAATCGAATATTATTTGTCGGATGCTTATCTCATGAAAGACAAATATTTG
TTACGTCAGATCCGGTGCAAAAAAGATGGTTACGTCAGTATCAAGCTTATTACGTCATTT
AAAAAGGTTAAAAAATTGACACGTGATTGGGCCGTCGTACGTAGCGCCATCGTGCGACTT
TCTACAACGGTCGTTGTGAGTTCGGAAGGACTTCGGATCCGAAGGCGCGCGAATCTTTCC
GAAAATCTCCGGAAACCTCGACAACTGACAAGCGTTCTGGCAATTCGATTACCTTCTGAA
TACAATTCCGTGGAGAAAGTGACGTCATTATTCGCATTGTTTGGTGAGATTGGGTTTGTG
AGATTGTTAAGAAGCGATAAAGAGGTTCCTTGTGATCTAAAAAATTATGCTACACAGGTT
TATGATATTGGCAAATCCTTGTGCGCTGTGGTAGATTTCGACCAATCAGAAGACGCGTTG
GCATCGGTTCGAATTCTGAAACACCTTCTGCAAAACAAGGACGATTATGACGTCATAAAG
GAACAAGAGAATATAAACGAAGATCAACTTGAAAAATATAAACAAGGAATAAAAGATCTG
TCTTCACTTGCCGGTACGAGGGTGGCACTTCTTGGTCCCCGAGTAAAAAGGACTCTCTAC
CGCCAAGACCGGACACAAGACGTCACGAACTTTCCCGACGATAGTGAAGTCCCTTGTCCA
GTGAAAGATAATACAGAACTGAAGGTTGATTATGACACAACAAACAAAGTCGACGTCACA
TCGAAAAATTCGCGAGGACCGCGACTTTGTGGGAGGAGAATAACAGGGACATCGTTACGT
CATAATAGTTGTAGTGTAACGCGACAACCGAGAGGGCCCGACCATGCATCGCCAGGATTT
ACTACGATTGTGACGAGAATTTAAAACTTGTTTTTTTATTAGAATTAACTTTTGGCCAAC
TGCCAAAATTGCAATAAGTAATCGATGCAAATAACTCACCGTGTAATGACGTCTTGATCG
TGTATTGTAAATATAACTCGCATTGACTTTTTATATTTGTGCCTCAATTTACCCATTATA
TACCACACACAC
| ProSiteProfiles |
La_HTH (IPR006630) - T[238-330] 20.661 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[239-327] 1.09E-20 |
| SMART |
La_HTH (IPR006630) - T[242-323] 1.8E-24 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[243-331] 4.8E-23 |
| Pfam |
La_HTH (IPR006630) - T[248-304] 3.4E-19 |
| PRINTS |
Lupus_La (IPR002344) - T[251-268] 6.8E-5 - T[277-292] 6.8E-5 - T[309-322] 6.8E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 28.517 % | 114 | 4.87E-27 |