- Transcript 'KH2012:KH.S966.3.v2....' >
- Transcript 'KH2012:KH.C11.197.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.197.v1.A.nonSL3-1
Possible name(s)
EXO1; FEN1; GEN1
Gene model
Location
KhC11 [360,038 / 362,701]
Amino acid sequence
Length: 747
>KH.C11.197.v1.A.nonSL3-1
VLMGIQGLLKFIKDATEDIHIREYANQTVAVDTYCWLHRGSFACAEKLAKKEKTDQYVKY
CMKYLDMLQVHKVKPILVFDGCRLPSKELVEQQRHKRRKENLEKGKQYLREGKLSQARDC
FTKCISVTPAMALDVMQAARSRGIDCIVAPYEADAQLAFLSKKGIAQAIITEDSDLLCFG
CNNVVFKMDVLGRGQQVKMEHLGRVKNLVGFTPELFRHMCILSGCDYLPSIKGVGLVKAC
KALKLSKSKDAYQVARKLNQYIKSVGPIDPSYGADFERADKTFLYQLVFDPSKRELIPLN
EYPPGVTVDDLNFAGAMFNKAEAFQLAIGNVDVNTKLRIGFFDVDEWISSRKSTSPSIWS
SKNNSHKAVSNADTVFIEQVSEKPTKQMNKPQKEEGLVLTAEDILEGVLKNEPDTEDFKE
KKVKLKPKMEPSISLRSQIENDLINSYKPTKRNKKNIGLRRSPRKIGQIVKSRFFVPTSS
SPKMKFAEVKSESENVLNGDEMFTDQETEGFSMADVTPDKVLDDILSEMSSEVGKPVDLP
ISPESSGLNPFSKNLNSSLKRNRSSLNSSDEGLRVFTGKKRKKIIIPNIEASPGLNEEVA
SLEISSGDVERTTDSINEGIPILDDKIKLTDKVNIKEETTDHQSEDLESIPILDIPRAPL
SLLEDGNGSSAANKDKQVVCLSCNTDEEAFVQKVPVRKTLGIRRSVVEPKNKTVSKYFGS
QKKVGLKKTNPKKSKSQKSITNFFNKS
Nucleotide sequence
Length: 2,446
>KH2012:KH.C11.197.v1.A.nonSL3-1
GTTTTAATGGGAATTCAAGGCCTTTTAAAGTTTATAAAAGATGCCACGGAAGATATACAC
ATTCGGGAATATGCAAACCAAACGGTTGCGGTCGATACTTACTGTTGGTTGCATAGAGGA
TCGTTTGCGTGCGCAGAAAAACTCGCGAAAAAAGAAAAGACGGATCAGTACGTAAAGTAC
TGCATGAAGTACCTGGATATGCTCCAAGTACATAAGGTAAAACCAATCTTAGTTTTCGAT
GGTTGTCGACTGCCTTCTAAAGAACTTGTTGAGCAGCAAAGACATAAACGCAGAAAAGAG
AATCTCGAAAAAGGCAAACAATATTTGAGAGAAGGTAAACTTTCCCAGGCTAGAGATTGT
TTTACTAAATGTATCAGTGTGACACCTGCCATGGCACTTGATGTTATGCAGGCGGCACGG
AGCCGTGGCATCGATTGTATCGTGGCACCATATGAAGCTGACGCACAACTTGCATTTTTA
TCCAAGAAAGGAATTGCTCAAGCAATTATCACCGAGGACTCGGATTTGTTGTGCTTTGGT
TGTAACAACGTTGTTTTTAAAATGGATGTGTTGGGAAGAGGTCAACAAGTGAAGATGGAA
CATTTGGGAAGAGTGAAGAATCTGGTCGGATTTACACCCGAGTTGTTCCGACATATGTGT
ATATTGTCAGGCTGTGATTATTTACCAAGCATTAAGGGTGTTGGGCTTGTTAAAGCTTGC
AAAGCACTCAAGTTATCAAAAAGCAAAGATGCATACCAAGTAGCAAGGAAATTGAACCAG
TACATTAAAAGTGTTGGACCAATTGATCCATCGTATGGGGCTGATTTTGAGCGTGCGGAT
AAGACATTTTTATACCAACTTGTGTTTGACCCTAGTAAGCGTGAACTTATACCTTTGAAT
GAATACCCACCTGGTGTGACTGTGGATGATCTAAACTTTGCAGGTGCCATGTTTAATAAA
GCAGAAGCATTTCAACTTGCTATCGGTAATGTGGATGTAAATACAAAACTTCGAATTGGT
TTCTTTGATGTTGATGAATGGATATCTAGTCGGAAATCTACTTCCCCAAGTATTTGGAGC
AGTAAAAATAACTCCCACAAGGCAGTGAGCAATGCAGACACTGTATTTATTGAACAAGTT
TCAGAGAAACCAACAAAACAGATGAACAAGCCACAAAAAGAAGAGGGACTTGTTCTTACT
GCAGAAGATATTTTGGAAGGGGTTTTAAAAAATGAGCCGGACACAGAAGATTTTAAAGAG
AAGAAGGTAAAGTTAAAACCCAAGATGGAACCAAGTATTAGTCTGAGAAGTCAAATTGAA
AATGACCTGATTAATAGTTACAAGCCAACAAAACGAAATAAAAAAAATATTGGTTTGAGA
AGAAGTCCAAGAAAAATTGGACAAATTGTAAAAAGTCGTTTTTTTGTCCCAACTTCCTCC
TCACCCAAGATGAAATTTGCGGAAGTAAAATCTGAAAGTGAAAACGTGTTGAACGGTGAT
GAGATGTTCACTGACCAAGAAACTGAAGGTTTCTCTATGGCTGATGTAACCCCAGATAAA
GTATTGGATGATATTTTATCTGAAATGTCAAGTGAGGTTGGGAAACCAGTGGATCTTCCC
ATTTCTCCTGAGAGTAGTGGGTTAAATCCTTTTAGTAAAAATTTGAATTCCAGTTTAAAA
CGGAATAGATCTTCACTAAATAGCAGCGATGAAGGATTAAGAGTGTTTACGGGGAAAAAA
CGTAAAAAAATTATAATTCCCAATATTGAGGCCAGTCCTGGTTTAAATGAAGAAGTTGCA
AGTTTAGAGATAAGTTCTGGTGATGTAGAGAGAACTACTGATTCAATTAACGAAGGAATT
CCTATATTAGATGATAAAATCAAACTCACAGATAAAGTAAATATAAAAGAAGAAACCACT
GATCATCAAAGTGAAGATTTAGAATCCATACCTATCCTAGATATACCTCGTGCACCGTTA
TCATTGTTAGAAGATGGTAACGGTAGTTCTGCTGCAAACAAAGATAAACAAGTTGTGTGT
TTATCGTGTAATACTGATGAGGAAGCTTTTGTTCAAAAAGTTCCTGTCAGAAAAACTTTG
GGAATTCGCAGAAGTGTTGTTGAACCAAAAAATAAAACTGTTTCTAAATATTTTGGTTCT
CAAAAAAAAGTGGGTTTAAAAAAAACTAATCCTAAAAAATCGAAATCTCAGAAAAGTATT
ACAAACTTTTTTAATAAATCGTAATAGTTTTACTCTTTATGACTTTTTACAACGTTTTAA
TAGAAACAATATTTTATAATTTTTCTTTTTCATGGTAAAACGGTTTAAACCTTAACATTG
TTACTGCTCTACTGTTTGGTGCTTTGAGATGTGCATAATACCTGCCAAGTTTTAATGGTT
TCATGACATACTTTCCTACTTTGAATAAAAAAAACTCGCTTTGTAA
| PANTHER |
Exo1 (IPR032641) - T[3-542] 6.5E-146 |
| SMART |
XPG_DNA_repair_N (IPR006085) - T[3-101] 3.0E-36 |
| PANTHER |
XPG/Rad2 (IPR006084) - T[3-542] 6.5E-146 |
| Pfam |
XPG_DNA_repair_N (IPR006085) - T[3-100] 6.3E-22 |
| SUPERFAMILY |
PIN-like_dom_sf (IPR029060) - T[4-226] 2.47E-63 |
| PRINTS |
XPG/Rad2 (IPR006084) - T[26-40] 2.6E-30 - T[75-94] 2.6E-30 - T[139-156] 2.6E-30 - T[160-180] 2.6E-30 - T[216-231] 2.6E-30 |
| ProSitePatterns |
XPG_CS (IPR019974) - T[73-87] . - T[143-157] . |
| SMART |
XPG-I_dom (IPR006086) - T[140-211] 1.4E-23 |
| Pfam |
XPG-I_dom (IPR006086) - T[141-226] 5.8E-23 |
| SUPERFAMILY |
5-3_exonuclease_C_sf (IPR036279) - T[211-340] 9.12E-20 |
| SMART |
HhH2 (IPR008918) - T[213-246] 1.2E-7 |
| CDD |
EXO1_H3TH (IPR037315) - T[214-290] 4.92388E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FEN1_HUMAN | 28.803 % | 88.2 | 1.5E-18 |
| EXO1_HUMAN | 46.169 % | 419 | 3.37E-135 |