Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.120.v1.C.nonSL1-1

Possible name(s)

ACTA1; ACTA2; ACTC1

Gene model

KH2012:KH.C1.120

Location

KhC1 [9,353,769 / 9,354,244]

Sequences

Amino acid sequence

Length: 125

>KH.C1.120.v1.C.nonSL1-1
TFTRLQASSLHSINSSKQTLIMSDSEEDQTALVCDNGSGLVKSGFAGDDAPRAVFPSIVG
RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRV
LPKN+

Nucleotide sequence

Length: 372

>KH2012:KH.C1.120.v1.C.nonSL1-1
ACATTCACTCGCTTACAAGCTTCAAGTCTTCACTCAATCAACTCAAGCAAGCAAACTTTA
ATCATGTCGGACTCCGAAGAAGATCAGACCGCTCTGGTTTGCGACAACGGATCTGGATTA
GTGAAATCAGGATTCGCCGGAGACGACGCACCTCGTGCTGTCTTCCCATCCATCGTTGGT
CGACCCCGCCATCAGGGTGTCATGGTCGGTATGGGACAAAAAGACAGCTACGTTGGTGAC
GAAGCACAAAGTAAGCGAGGTATCCTGACCCTGAAATACCCGATCGAGCACGGTATCATC
ACCAACTGGGACGACATGGAAAAGATCTGGCATCACACTTTCTACAACGAACTCCGTGTG
CTCCCGAAGAAC

InterProScan

PANTHER	Actin (IPR004000) - T[26-123] 1.4E-64
Pfam	Actin (IPR004000) - T[28-123] 3.6E-30
PRINTS	Actin (IPR004000) - T[50-59] 6.2E-24 - T[73-84] 6.2E-24 - T[85-107] 6.2E-24
ProSitePatterns	Actin_CS (IPR004001) - T[77-87] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ACTA_HUMAN	93.878 %	205	1.46E-66
ACTS_HUMAN	93.878 %	204	2.13E-66
ACTC_HUMAN	93.137 %	205	1.43E-66