- Transcript 'KH2012:KH.C11.212.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.212.v1.A.ND1-1
Possible name(s)
IGFALS; LRIG2; LRRC70
Gene model
Location
KhC11 [3,053,401 / 3,057,289]
Amino acid sequence
Length: 395
>KH.C11.212.v1.A.ND1-1
MYAIKRFGLFCTLLLLAGTSVAQISNLSNCSRTEASWGPESVIEITCARLGFSTITRPFI
SSLLHENIRRNEGSKLKLFLNKNLNLAPCCTYASVFYLWSHVRVLNLVGNAIQQLKPLAM
TGLTSLKNLFLGSNDINIIYPGSFVELRSLDWLDLSRNKISEFSYTTFMGLSMLKSLNLE
YNNISAIRTAGFGALLRLENLYLEGNRISSINGGSLAGMYSLQFLSLKRNELSRIADGTF
AGNPQLTQLDLSYNQITEIKSSTFVGLTALRILKLNGNMISTIKDHAFTHVPQLSELDLS
HNALTTLRRNMFLGLVNIHVLDISENWMHGTALSTDDTYGSPKSDLIEAIGIICRKPGLY
FTNLRNNGLIPMLNNVTQQALGFDFADGTQHFCVF
Nucleotide sequence
Length: 1,325
>KH2012:KH.C11.212.v1.A.ND1-1
AAATGTATGCTATTAAGCGGTTCGGTTTGTTTTGTACTTTGCTGTTACTTGCTGGAACTT
CTGTAGCCCAAATATCAAATTTAAGCAACTGCAGTCGAACTGAGGCGTCCTGGGGACCTG
AAAGCGTGATTGAAATCACGTGCGCAAGGCTGGGCTTTTCGACCATAACACGACCGTTTA
TATCTTCGCTGTTGCACGAAAATATTCGTCGCAACGAAGGAAGTAAGTTGAAGTTATTTT
TGAATAAAAACCTTAACCTTGCGCCGTGCTGTACCTACGCATCAGTGTTTTATTTATGGA
GCCATGTTCGGGTGTTGAACCTTGTGGGGAACGCAATTCAACAACTGAAACCGCTCGCCA
TGACTGGCCTTACATCTCTTAAGAATTTGTTTTTGGGTTCAAACGACATCAATATCATCT
ATCCTGGCTCCTTCGTCGAGCTGAGGAGTCTTGATTGGTTGGATTTGTCGCGAAACAAGA
TTTCCGAATTCTCCTACACGACGTTCATGGGACTGAGTATGCTAAAATCTCTCAACTTGG
AATACAACAATATCTCCGCCATTCGAACAGCTGGCTTTGGCGCACTCTTGCGGTTGGAAA
ATTTGTACCTTGAGGGCAACAGAATTTCTTCTATTAACGGTGGCTCACTGGCTGGCATGT
ACAGCTTGCAGTTTCTGTCTTTAAAAAGAAACGAATTAAGCCGAATAGCCGATGGAACAT
TTGCAGGAAATCCACAGCTAACACAACTAGATTTGTCTTACAACCAAATTACGGAAATCA
AATCTTCGACTTTTGTTGGTTTGACTGCATTGCGAATTTTAAAACTTAATGGTAACATGA
TCAGCACAATAAAGGACCACGCGTTTACTCATGTACCTCAGCTGTCCGAACTTGATTTGT
CTCATAATGCTTTGACTACGCTCCGAAGAAATATGTTCCTTGGTCTTGTAAACATCCATG
TGTTAGATATATCAGAAAACTGGATGCACGGTACAGCTCTATCAACAGATGACACTTATG
GGTCACCTAAATCCGATCTTATTGAAGCTATTGGTATCATTTGCCGAAAGCCTGGTCTTT
ATTTTACTAATCTCCGAAACAACGGTTTGATTCCTATGCTAAACAATGTGACACAGCAAG
CACTCGGGTTTGACTTTGCAGACGGTACTCAACATTTCTGCGTGTTTTAAATTGATTTTT
TGCAAATTTAGTTCTTATGAGAGTTATATTCTTTTTTGCTGTATATTACCCAGATGTATA
TGTATATTTGTTTTTTTTCCCCTATTAATACAATACAGCTGGCGCAATGAAATACAAAAA
ACAAT
| Gene3D |
LRR_dom_sf (IPR032675) - T[81-201] 4.8E-24 - T[202-348] 2.9E-36 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[100-160] 5.7E-15 - T[222-280] 3.3E-15 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[101-122] 5.925 - T[125-146] 5.664 - T[149-170] 7.258 - T[173-194] 5.794 - T[197-218] 7.296 - T[221-242] 6.226 - T[245-266] 8.259 - T[269-290] 6.38 - T[293-314] 7.358 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[123-146] 24.0 - T[147-170] 1.6 - T[171-194] 0.91 - T[195-218] 4.9 - T[219-242] 0.04 - T[244-266] 2.9 - T[267-290] 0.014 - T[291-314] 0.0021 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ALS_HUMAN | 33.047 % | 112 | 4.77E-27 |
| LRIG2_HUMAN | 35.922 % | 111 | 2.38E-26 |
| LRR70_HUMAN | 34.234 % | 112 | 6.64E-27 |