- Clone 'ma122a24' >
- Transcript 'KH2012:KH.C1.1220.v2...'
Transcript Model
Transcript Id
KH2012:KH.C1.1220.v2.A.SL2-1
Possible name(s)
COL12A1; COL20A1; SELP
Gene model
Location
KhC1 [428,639 / 433,638]
Amino acid sequence
Length: 386
>KH.C1.1220.v2.A.SL2-1
GSCKRLRAPRNGRMKCTGGNGPLSSCVFTCNRGHMMIGAAVSTCDYFSTRDNPAPICEPI
KCEYPVVPQNGSVTCTRGRAVGSRCRYNCDEGYKLVGATYMTCTEETMGGTYGLWSRMPP
VCQPKQCPLQNLRNGRIDCTNSNFVGSTCALICSAELGYQVYPPTTQALNCQSNEEWDKA
MPCCSRPCPPFAVMDFVVVLDSSSSVGRSNWNKMKAFVRSFIADFSIRDDATHVSVVRYN
RHVDTTTQILLDDHPNSSEDLLAAFDRIPYNGSGTRTGQALNYTAGTLIPTGNRPNARDV
VLLITDGASQDDVVVPSQNLHATGALVFVLPVQPPRVRLRMDEIYTIAGNRANVITDALE
GGFAALDEEFAGRISQLLCASPCPLN
Nucleotide sequence
Length: 1,764
>KH2012:KH.C1.1220.v2.A.SL2-1
GTGGATCCTGTAAGAGGCTGAGAGCACCTCGTAATGGTAGGATGAAATGCACCGGAGGCA
ACGGCCCTCTAAGTTCATGTGTGTTTACATGTAACCGGGGCCATATGATGATTGGTGCGG
CTGTATCAACATGCGATTACTTCAGTACGAGAGATAACCCCGCCCCTATTTGTGAGCCAA
TCAAATGCGAGTATCCAGTGGTACCACAAAATGGGTCTGTGACGTGTACAAGAGGTCGCG
CGGTCGGCAGCAGATGCAGATATAACTGCGATGAAGGCTACAAGTTGGTCGGTGCAACGT
ACATGACATGCACAGAGGAAACCATGGGTGGGACTTATGGTTTATGGAGTAGAATGCCAC
CTGTATGCCAACCCAAACAATGCCCGTTGCAGAACCTCCGCAACGGGAGGATAGATTGCA
CCAACTCCAACTTTGTCGGATCAACTTGTGCATTAATTTGCAGTGCCGAGTTAGGTTATC
AAGTCTACCCACCGACCACACAAGCCCTCAACTGTCAATCAAATGAGGAATGGGACAAAG
CGATGCCTTGTTGCTCACGTCCCTGCCCACCGTTTGCCGTGATGGACTTCGTAGTTGTAC
TTGATTCGTCGTCATCTGTTGGTCGTTCAAACTGGAACAAAATGAAAGCATTTGTTAGAA
GTTTTATCGCTGACTTTAGTATACGTGATGACGCTACACACGTAAGCGTGGTAAGGTACA
ACCGTCACGTGGATACAACTACACAGATTCTATTGGACGACCACCCTAATAGTTCGGAAG
ATTTGCTTGCAGCATTCGACAGGATACCTTACAATGGGAGTGGCACACGCACTGGGCAAG
CACTCAACTACACAGCCGGTACATTAATACCAACAGGCAACCGACCCAACGCTAGAGATG
TCGTTTTACTTATAACTGACGGTGCGTCACAGGATGACGTAGTGGTGCCGTCACAAAACT
TACATGCAACTGGCGCCTTAGTATTCGTTTTACCTGTCCAACCTCCCCGAGTTCGTCTTC
GCATGGATGAGATCTACACCATAGCTGGCAATCGTGCCAATGTTATCACAGATGCATTGG
AGGGCGGGTTCGCAGCTCTTGATGAAGAATTCGCCGGCAGAATCAGCCAACTGCTTTGTG
CATCTCCTTGCCCGTTGAACTAACGCATCATATCTTGGTATAGTGGGGTGGGGGAAGATG
GGACACATTTAGAACATAATATTTAAATATCTTGATCGTGTTTTAAACAATCACCAACGG
TCCCTGAGAGTCGCGAGGATACGGTTTTATAATTCTTCGAATATTCGCCTATCTTCCCAA
TCCTACTATACATCTGGATATTATTTTAACTTTTACAATCAATGAGCTTGTTTAGGTTAT
GAATCTGTATATGAATCTACACGTTATAATAAGCATTAGTTATGTGGCTATTTATGTATA
GTAGGTTGGGGTAAGTTTGGCTTTGTTATTATTCCCTTTTATCGTCTTATTTGGTGGCAA
ACAAGGTATAATCAAAGAAATATATATATACCCGTATTGTTGGGGATTTTAAAGAGCGTT
TTCAACTGTTCAAAACACGAATAAGAAATCTGAGTCCTTATGCGTGTTAACGGTATCCAT
CTTACCCCACACTTCTATCTACGTTTACCTAACCATTGCTCCAGCGGCTTACTTATTTCA
TCGATGACGTAACAGACATATCTTTACTACGTCATAGCATAAACTGTGTAATAGTAGAAT
CGTTTAAGATTTTATCGACTGCCT
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[1-59] 6.231 - T[60-124] 10.343 - T[125-186] 7.205 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[2-71] 2.08E-11 - T[56-124] 1.67E-14 - T[121-186] 6.39E-6 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[3-58] 1.22929E-7 - T[62-123] 2.17041E-13 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[3-57] 1.2E-4 - T[62-122] 5.4E-12 - T[127-184] 4.1 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[62-122] 1.6E-7 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[188-379] 2.23E-40 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[193-382] 1.2E-36 |
| SMART |
VWF_A (IPR002035) - T[193-371] 8.7E-25 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[195-374] 23.179 |
| Pfam |
VWF_A (IPR002035) - T[195-348] 3.7E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 31.771 % | 90.1 | 1.76E-19 |
| LYAM2_HUMAN | 31.443 % | 85.9 | 3.98E-18 |
| COCA1_HUMAN | 36.486 % | 89.7 | 3.11E-19 |