- Transcript 'KH2012:KH.C5.66.v9.A...' >
- Clone 'cima878813' >
- Transcript 'KH2012:KH.C11.238.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.238.v2.A.SL3-1
Possible name(s)
REL; RELA; RELB
Gene model
Location
KhC11 [3,650,621 / 3,658,587]
Amino acid sequence
Length: 713
>KH.C11.238.v2.A.SL3-1
TWSNHFNMDRIPVLEIVEQPKQRGMRFRYECEGRSAGSIPGKNTNGDRKTWPSCQVLNYS
GVAIMRVSLVSKDDPPRPHPHSLVGRDCNNGVCQINVDPGNQMLGVFPNLGIQCVRRREV
SQAIQDRLNHGVNPFGTMLDGDERSAVDVDLNIVRLCFEAFIPDARGKYTQKLEPVVSDP
IYDKKATCSSVLKICRVDKTHGSCMGNEEVFLLCDKVQKEDIQVVFYRDNWEALGDFSSV
DVHRQVAIVFRTPPFCNENIQEKVDVQFKLRRPSDMETSKPLVFTYLPVYHEMPQKHKFP
TQLLSHPIRSNNNKNGEIRKFISDRIRKSKEPAQRQMYSPNPNIAAASLNHHGMIRNPSN
PTICPTAQPSTEQFTSTMNPSYQYVKREDHSSTAIFPGDPQWPDSSHSQPPFPSASSLFN
DSMVQPGFGPIQNTTATPFFDANSGKFISEKSTISEVQKSELAMPTALPPADDGQTQRSY
FWSDLLKQEDSIPRLDAEQTRQLLQDNVSMPDTALENISMDSMLEQWMSKKCSIEGPMSI
NLTDILASENLPSTNNGPTQPIENEYQQMSPYPAFSTSNTAPTTSNLLTQSMTFSQTTMP
LDATSTGILSPNHTPQLFNHQQHPVMSPIHPSSHQPQQNAVNMQRMDMNLPGQQQRFHPQ
FSEPTPFGTNSNNNHCIEQTNPGTFALSPTQNDHNVESTIISTFLQNLETVQR
Nucleotide sequence
Length: 2,705
>KH2012:KH.C11.238.v2.A.SL3-1
CTACTTGGTCCAATCATTTCAATATGGATAGAATTCCAGTATTGGAGATTGTGGAGCAAC
CTAAGCAGCGTGGAATGAGGTTTCGATACGAATGTGAAGGGAGATCTGCTGGAAGTATTC
CTGGGAAAAATACAAATGGCGATCGAAAAACATGGCCGTCATGCCAGGTCTTGAACTACT
CTGGTGTGGCGATCATGCGAGTTTCACTTGTGTCCAAAGACGACCCACCAAGACCCCACC
CTCACAGTTTAGTTGGGAGAGACTGTAACAACGGGGTTTGTCAGATTAACGTGGATCCTG
GCAACCAAATGCTAGGGGTTTTCCCGAACCTTGGAATTCAGTGCGTGCGACGCAGAGAAG
TCAGTCAAGCGATACAAGATCGTTTAAACCACGGAGTGAATCCCTTCGGTACGATGTTGG
ACGGAGACGAGAGATCCGCAGTTGATGTCGACCTTAATATTGTTCGTCTTTGTTTTGAAG
CTTTTATCCCGGACGCAAGGGGAAAATACACACAAAAACTGGAACCCGTTGTGTCAGATC
CAATATATGATAAAAAAGCCACTTGTTCGTCTGTGTTGAAAATATGTCGTGTCGATAAAA
CCCACGGAAGCTGTATGGGTAACGAAGAAGTGTTTCTCTTGTGCGACAAAGTACAGAAAG
AGGACATCCAAGTTGTTTTCTATCGCGATAACTGGGAAGCTTTGGGTGACTTTTCATCCG
TGGATGTTCATAGACAGGTTGCTATTGTGTTCCGAACACCACCTTTTTGCAACGAAAATA
TCCAAGAGAAAGTAGATGTACAATTTAAACTAAGAAGGCCATCAGACATGGAGACAAGCA
AGCCCCTAGTATTCACCTATCTCCCTGTATATCATGAAATGCCCCAGAAACATAAATTTC
CGACCCAGCTACTCTCCCATCCGATCAGGAGCAACAACAACAAAAACGGAGAAATTAGGA
AATTTATCAGCGACCGAATACGAAAATCAAAAGAACCAGCTCAAAGACAGATGTATTCCC
CTAATCCGAACATCGCTGCAGCTTCTCTTAACCATCACGGCATGATAAGGAACCCCAGCA
ACCCCACAATTTGTCCAACAGCTCAGCCTTCCACCGAGCAATTTACTTCAACGATGAACC
CAAGCTACCAGTATGTGAAACGGGAAGATCACTCCTCCACCGCCATCTTTCCCGGCGACC
CCCAGTGGCCGGACAGTAGTCATTCCCAGCCACCATTTCCAAGTGCTAGCAGTCTTTTCA
ACGACAGCATGGTACAACCAGGGTTCGGCCCCATACAGAACACCACAGCCACTCCATTCT
TCGATGCAAACAGCGGAAAGTTCATCAGCGAAAAATCAACAATCAGCGAAGTGCAAAAAA
GCGAGCTCGCAATGCCGACAGCTTTGCCGCCTGCAGACGATGGGCAAACGCAACGTAGTT
ACTTCTGGAGTGATTTGTTAAAACAGGAAGACAGCATCCCACGTCTTGATGCCGAGCAAA
CCCGTCAACTTCTTCAGGACAATGTTTCAATGCCAGACACCGCGTTGGAAAATATTTCCA
TGGATTCCATGCTGGAACAGTGGATGTCAAAGAAGTGCAGCATTGAAGGCCCAATGAGCA
TCAACCTTACTGATATCCTTGCCAGTGAAAACCTACCATCGACCAACAACGGCCCTACAC
AACCCATTGAGAATGAATACCAACAGATGTCTCCTTACCCTGCTTTCTCCACCTCCAACA
CCGCTCCTACAACTTCTAACTTGCTAACCCAGTCAATGACATTCTCCCAAACAACTATGC
CCCTGGACGCTACCAGCACTGGGATATTATCCCCTAACCATACGCCGCAGCTGTTTAACC
ATCAACAACACCCAGTTATGTCCCCAATACATCCTTCGTCCCACCAGCCGCAGCAGAACG
CAGTGAACATGCAGCGAATGGACATGAACCTCCCTGGTCAGCAGCAGCGATTCCACCCAC
AGTTTTCCGAACCCACCCCCTTTGGAACCAACAGCAACAATAACCATTGCATCGAGCAGA
CGAACCCAGGAACTTTTGCACTATCCCCCACTCAAAACGACCACAACGTAGAAAGCACCA
TCATAAGCACGTTCCTTCAAAATCTTGAAACTGTGCAGAGATAATGGTCATACTTTCATT
GGAAATCATGGACGAATGATATCAGCACCCACGTCGGGCTCTTCAACGTGCGTTTTCAGT
CCAACTTGAGAGCAACTCTTTTCATTGTGTGTTCATTAACGTTTTATTATTGCGCCGTTC
CAGTGGTTTAACACCGTTGATCACATTTCAAAATAGAGCTGCATAACTCTAGTCAACTGA
AATTCGTTTGTTTTAAGATATCACGTTTTTAGCTTTTTTGAACTTATTTTTATCATTTTT
AACTACAATAATTCTGGTGAACTGTTTACAGAAATACCATTGCAGCAACTCTGACGTAAC
AGCAAAATGTTTTTTTATGCTAAAGTTTTACTCTCTTTACCCAGCAGCATGCAACTTGAA
AATATAAAATGTCGATTTGGCCTCTTTTTGGCCAATCACATATTTCCAATTTAATGTCAT
ACGTCTATATCAAGTCAGCATTATGGAACCTGCTCTGAAACTTATCTTATGTTGTACTAA
TACTATTCCTATAACCTTCAGTAGTGTGTTTGAACTATTACGTAGCAACCGATGTGTTTG
GAACC
| Gene3D |
RHD_DNA_bind_dom_sf (IPR037059) - T[4-185] 4.4E-65 |
| ProSiteProfiles |
RHD_DNA_bind_dom (IPR011539) - T[9-188] 71.361 |
| PANTHER |
NFkB/Dor (IPR000451) - T[12-390] 6.8E-138 - T[543-651] 6.8E-138 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[12-194] 7.15E-70 |
| Pfam |
RHD_DNA_bind_dom (IPR011539) - T[14-184] 5.3E-66 |
| PRINTS |
NFkB/Dor (IPR000451) - T[18-35] 4.7E-40 - T[173-187] 4.7E-40 - T[206-226] 4.7E-40 - T[237-255] 4.7E-40 - T[278-292] 4.7E-40 |
| ProSitePatterns |
RHD_CS (IPR030492) - T[27-33] . |
| Gene3D |
Ig-like_fold (IPR013783) - T[189-299] 3.5E-42 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[190-297] 3.27E-41 |
| SMART |
IPT_dom (IPR002909) - T[191-287] 2.0E-21 |
| CDD |
IPT_NFkappaB (IPR033926) - T[192-288] 1.00058E-47 |
| Pfam |
RHD_dimer (IPR032397) - T[193-288] 2.6E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| REL_HUMAN | 53.43 % | 315 | 1.95E-98 |
| TF65_HUMAN | 51.724 % | 306 | 1.54E-95 |
| RELB_HUMAN | 50.177 % | 286 | 6.49E-88 |