- Transcript 'Boleac.CG.SB_v3.S212...' >
- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Molecular Tool 'Tbx6b/c/d-MO (Imai's 25mer MO)' >
- Transcript 'KH2012:KH.C11.267.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.267.v1.A.SL1-1
Possible name(s)
SEC23A; SEC23B; SEC24B
Gene model
Location
KhC11 [4,290,942 / 4,300,190]
Amino acid sequence
Length: 774
>KH.C11.267.v1.A.SL1-1
TLRGKRQYKMSTYQEYIMQNEDRDGIRWSWNVWPSSRLEATRMVVPLSCLFTPLKERVDL
PPIQYEPILCTRHTCRAVLNPLCQVDYRSKIWSCNFCYQRNPFPASYGAISETHQPAELI
PQFTTIEYQVPGSAPIGPLFLFVIDTCMDEEDLQAMKESLQMSLSLLPNNAVIGLITYGR
MVQVHELGTEGISKSYVFRGTKDLAAKQIQEMLGLNKVASGNPQQGQQPQARPANRFLQP
LHKCDMFVTDLLGELQRDPWPVSQGKRPVRSVGAALSIAVGLLECAFPNVASRIMLFMGG
PCTQGPGMIIDESLENTIRSWYDIEKDNNKYTKKAVKHYESLSVRAANNGHVIDIYACAL
DQTGLHEMKCCTNITGGIMVMGDSFNTSLFKQTFQKVFSKDSKGEFNMAFNAVMEIKTSR
EIKVNGVIGPCVSLNVKSPCVSETEIGIGGTSQWKASGIDPATTLSVFFEVVNQHNTPIP
QGGRGNVQFITHYVHSSGQRRIRVTTIARNWADSATGQAHVAAGFDQEAAAVLMSRLAIN
RSVSDDGTDVLRWLDRMLIRLCQKFGEFQKDSPESFRFAENFSLYPQFMFHLRRSSFLQV
FGHSPDEIAYYRYQFNRQDLTNSLIMMQPVLYSYSFNGPPEPVLLDSTSIQADKILLLDT
FFQVLIYHGETIDQWKKAGYQEKPEYENFRQLMQAPVDDAQDILATRFPIPRYIETQHGG
SQARFLLHKVNPSQTHNTMWGGGQQDGSAPVLTDDVSLQVFMDHLKKLAVSSST
Nucleotide sequence
Length: 2,480
>KH2012:KH.C11.267.v1.A.SL1-1
CCAACTTTTAGGAAATTTCCAACAGTTTTAAACCTTGCGTGGCAAGCGGCAATATAAGAT
GTCGACGTACCAGGAATACATCATGCAGAATGAGGACAGGGACGGCATTCGATGGAGTTG
GAATGTGTGGCCGTCGTCGCGGCTCGAAGCCACTCGAATGGTGGTGCCGCTATCTTGTTT
ATTCACACCACTAAAGGAGCGTGTAGATTTACCTCCAATACAATATGAACCTATCTTGTG
CACCAGACACACTTGCAGAGCTGTGTTAAACCCCCTCTGCCAAGTTGATTACAGAAGCAA
GATTTGGTCGTGCAACTTCTGTTACCAACGTAACCCATTTCCAGCAAGTTACGGAGCGAT
ATCAGAGACTCATCAACCTGCGGAACTCATCCCACAGTTTACAACCATCGAGTACCAAGT
GCCCGGCTCTGCTCCCATTGGACCTTTGTTCTTATTCGTGATTGACACCTGTATGGACGA
GGAAGATCTGCAGGCAATGAAGGAATCTCTTCAAATGTCGCTTAGTTTGTTGCCCAACAA
TGCCGTTATCGGTCTCATTACGTATGGTAGGATGGTACAAGTGCATGAACTCGGTACTGA
AGGAATATCGAAAAGTTATGTTTTCCGAGGAACCAAAGACCTCGCTGCTAAGCAGATTCA
AGAAATGCTTGGTTTGAACAAAGTGGCCTCGGGTAACCCCCAACAAGGTCAACAACCTCA
AGCAAGACCAGCTAACAGGTTCCTTCAGCCATTACATAAATGCGACATGTTTGTCACTGA
TTTACTTGGCGAGTTACAACGGGATCCATGGCCTGTTAGTCAAGGCAAACGTCCCGTGAG
ATCTGTTGGAGCTGCTCTGTCCATTGCTGTTGGTTTGCTAGAGTGTGCCTTCCCTAACGT
AGCATCGCGTATCATGTTGTTCATGGGAGGACCTTGCACCCAAGGCCCCGGTATGATCAT
CGATGAAAGCTTGGAAAACACAATCAGGTCATGGTACGATATTGAGAAGGATAACAATAA
ATACACCAAGAAGGCAGTCAAGCATTATGAATCTCTTTCTGTGAGAGCTGCCAATAATGG
TCACGTGATTGACATCTATGCGTGCGCGCTTGATCAAACTGGTCTCCATGAAATGAAATG
TTGCACCAACATTACAGGTGGTATCATGGTCATGGGAGATTCATTTAACACCTCACTGTT
CAAACAAACTTTCCAAAAGGTTTTCTCCAAAGACAGCAAGGGTGAATTTAACATGGCATT
CAATGCCGTCATGGAGATCAAGACCTCCCGAGAAATCAAAGTGAACGGGGTTATCGGACC
TTGTGTGTCGCTTAACGTGAAGAGTCCGTGTGTATCGGAGACCGAGATCGGCATCGGGGG
AACTTCTCAGTGGAAAGCGAGCGGTATCGACCCCGCCACCACTTTGTCGGTGTTCTTCGA
AGTTGTTAACCAGCACAACACCCCCATACCACAAGGGGGACGGGGTAACGTTCAATTCAT
CACCCACTACGTTCATTCAAGCGGACAACGACGTATTCGGGTCACAACAATTGCCCGGAA
TTGGGCGGACTCAGCCACCGGCCAGGCACACGTAGCTGCAGGTTTTGACCAAGAAGCTGC
TGCTGTTTTGATGTCACGTCTCGCAATCAACCGATCCGTGAGCGACGATGGGACAGATGT
CCTTCGTTGGCTGGATAGGATGCTTATCAGGCTTTGCCAAAAGTTCGGGGAGTTTCAGAA
AGATTCTCCTGAAAGTTTCAGATTTGCTGAGAATTTCTCACTTTATCCACAGTTCATGTT
CCACCTTCGAAGATCCAGTTTCCTCCAAGTATTCGGACACAGCCCAGATGAGATCGCTTA
TTATCGATACCAGTTTAATAGGCAGGATCTCACTAACTCACTCATCATGATGCAGCCAGT
GTTGTATTCATATTCATTCAATGGTCCTCCTGAGCCAGTCTTATTGGACAGTACAAGCAT
ACAAGCGGACAAGATCCTTCTGTTAGACACTTTCTTCCAAGTTCTCATCTACCATGGAGA
GACAATAGATCAATGGAAGAAGGCTGGGTACCAAGAGAAACCCGAATATGAAAACTTCCG
TCAACTAATGCAAGCACCCGTGGATGACGCACAAGATATACTCGCTACCAGGTTTCCAAT
ACCAAGATACATTGAGACCCAGCATGGCGGGAGTCAGGCCCGCTTCCTTCTCCACAAAGT
CAACCCCTCACAAACCCACAACACGATGTGGGGAGGTGGTCAACAAGATGGATCCGCCCC
TGTACTGACAGACGACGTCAGCTTACAAGTGTTCATGGACCACCTTAAAAAGTTGGCTGT
ATCTAGCTCCACGTAAGAATTGCCCCTGTTACGTCACAGTGCAATACCATTACCGCTTAT
GATAACATTTTAATCGAAAGTAGAATAAACGAAGTGCTCAAGTTTTATAGCTTTGTACAA
ATACAAGATGTATGAGAATA
| PANTHER |
Sec23 (IPR037364) - T[10-772] 0.0 |
| SUPERFAMILY |
Znf_Sec23_Sec24_sf (IPR036174) - T[60-132] 2.49E-20 |
| Pfam |
Znf_Sec23_Sec24 (IPR006895) - T[67-107] 1.8E-14 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[137-408] 2.7E-209 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[138-400] 2.0E-86 |
| Pfam |
Sec23/24_trunk_dom (IPR006896) - T[138-398] 2.6E-75 |
| Pfam |
Sec23_24_beta_S (IPR012990) - T[409-512] 1.0E-31 |
| SUPERFAMILY |
Sec23/24_helical_dom_sf (IPR036175) - T[526-628] 2.09E-42 |
| Pfam |
Sec23/24_helical_dom (IPR006900) - T[526-624] 1.4E-24 |
| CDD |
Sec23_C (IPR037550) - T[618-738] 2.78279E-78 |
| Gene3D |
ADF-H/Gelsolin-like_dom_sf (IPR029006) - T[628-732] 1.0E-114 |
| SUPERFAMILY |
Gelsolin-like_dom_sf (IPR036180) - T[629-770] 2.88E-54 |
| Pfam |
Gelsolin-like_dom (IPR007123) - T[640-726] 1.6E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SC23A_HUMAN | 73.698 % | 1221 | 0 |
| SC23B_HUMAN | 72.229 % | 1196 | 0 |