- Transcript 'KH2012:KH.C11.274.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.274.v2.A.ND1-1
Possible name(s)
CSMD1; SELP; SVEP1
Gene model
Location
KhC11 [384,102 / 394,186]
Amino acid sequence
Length: 841
>KH.C11.274.v2.A.ND1-1
RMNSVSILYLVAGLASVAALRCWECNNVGSNEECIQQGKLVQCGTNQDACQIELRHGGWG
YKVMISKRCKQSQACENNFNQNPQSAWEFTQCNLRVPSSVCRCCCKGNECNKGSLTCWTD
NATCVPSHTNPRNGRVSCTNTNEVGSSCSFDCNTGYRLIGSPTSVCQDDQTWDRSAPECR
PLVCRPRLMAPSNGFMTCDKGNYIESECSFRCNVGYRLEGSETSVCQNDETWSNAAPECQ
PILCPPPHVAPPNGNVKCTNNNLLGSRCRFKCNKDYALVGDRLSTCVESNNRPYDSDGVW
NTPAPKCQRITCIPDMKSPLHGSMECTDGSNAGSRCTFHCEDGYSMIGSMYTACVDEIGT
LRGVWQNPAPVCRPIQCTPSQEDPDNGRVFCSNGIQLGSVCRFMCSHGYAMLGTGMTTCL
NDGNGDTIGTWSAPPSRCKPIVCLPLHEAPTNGFVSCTNDAYLGSVCHFTCADDYKLMGN
PTCTCNEGRDGGVVGRWSDFAPVCRRKTCPGGLMDPLNGGTVCSDGIFLGSQCEFVCDEY
HMRVGALYSTCVELDDGSVEWDQPTPRCRPITCPDQFPLPHGEMSCTKSNFATSRCNFKC
TAEKYQLYPPGVTENHCMNNSRWNIEKPCCARSCPPFAVMDFVVILDSSSSVGSENWMKI
KTFTHQFLSTFILSPEGSQYSVFRYNRNVDINSQILLKDHPTNIEDFIYAFEQIPYDGSG
THTGKAINHAVDIVLAPGNGNRVNARDIVLVITDGKSQDDVGGPALRLRQTGATVFVLPI
MPPKGRLDMRQVRQIAGSEDNIIKDAIEGGFEALTEHFSKKVSNIICGNPCKHVLHDHLA
L
Nucleotide sequence
Length: 2,845
>KH2012:KH.C11.274.v2.A.ND1-1
AGTGAAGAATGAATTCTGTATCTATCTTATACTTAGTTGCAGGACTAGCATCTGTTGCAG
CCCTAAGGTGTTGGGAATGTAACAACGTCGGATCAAACGAGGAATGTATACAGCAAGGGA
AACTCGTGCAATGCGGAACTAACCAGGATGCTTGCCAAATTGAGTTACGTCACGGGGGCT
GGGGTTATAAAGTAATGATCTCTAAAAGATGCAAACAGTCACAAGCATGCGAGAACAACT
TTAATCAGAACCCTCAAAGTGCTTGGGAGTTCACGCAATGCAATCTACGCGTCCCATCAT
CAGTGTGTAGATGTTGTTGTAAGGGGAATGAATGCAACAAGGGAAGTCTCACTTGCTGGA
CTGACAATGCAACATGTGTGCCTTCCCACACTAACCCACGCAATGGCCGAGTGAGTTGCA
CCAACACTAATGAAGTTGGAAGTAGTTGTTCCTTTGATTGCAACACAGGATACAGATTGA
TTGGTTCACCTACATCAGTTTGTCAGGATGATCAGACTTGGGACAGAAGCGCGCCCGAAT
GTAGACCGTTGGTTTGTAGACCACGACTTATGGCGCCATCTAATGGTTTTATGACATGCG
ACAAAGGGAATTACATCGAAAGTGAATGTTCGTTTAGATGCAACGTTGGGTATAGATTGG
AAGGCAGTGAGACTTCAGTTTGTCAAAATGATGAAACATGGAGCAATGCTGCCCCCGAGT
GTCAACCCATCTTATGCCCTCCACCACATGTTGCGCCACCAAATGGAAATGTCAAGTGTA
CGAATAATAATCTTCTCGGCAGTAGGTGCAGATTCAAGTGCAACAAAGATTATGCTTTGG
TTGGTGATCGACTATCAACTTGTGTTGAAAGCAACAACAGACCTTATGATAGTGACGGTG
TATGGAACACTCCTGCACCAAAATGTCAAAGAATCACTTGCATACCTGACATGAAGTCAC
CACTACATGGCAGTATGGAGTGCACTGATGGATCAAATGCGGGGAGCAGATGTACATTCC
ATTGTGAAGATGGCTACAGCATGATTGGTAGCATGTACACAGCATGTGTGGATGAGATTG
GAACCTTAAGAGGGGTATGGCAGAACCCAGCACCTGTGTGTAGACCAATCCAGTGCACCC
CAAGCCAAGAAGATCCAGATAACGGCCGCGTTTTCTGTTCCAATGGAATACAACTTGGTT
CAGTTTGTCGTTTCATGTGTAGTCATGGTTACGCAATGTTAGGAACGGGCATGACAACTT
GTTTGAACGACGGGAACGGAGACACCATTGGCACCTGGAGCGCACCACCGTCACGATGCA
AACCAATTGTATGCTTGCCACTCCACGAGGCTCCCACTAATGGGTTTGTGTCGTGCACCA
ATGATGCCTACCTCGGGAGTGTATGCCACTTTACCTGCGCTGATGATTATAAACTAATGG
GCAATCCAACTTGCACTTGTAATGAGGGGCGTGATGGGGGCGTGGTAGGCAGATGGAGCG
ACTTTGCACCAGTGTGTAGGCGCAAGACTTGTCCAGGAGGTTTAATGGACCCTTTGAACG
GTGGAACAGTTTGTTCAGATGGTATTTTCCTTGGTTCTCAATGTGAATTTGTATGCGATG
AATATCACATGAGAGTTGGAGCACTGTACAGTACTTGTGTTGAGTTGGATGATGGATCTG
TTGAATGGGACCAACCTACACCTCGTTGCAGACCAATCACGTGTCCGGATCAATTCCCTC
TTCCTCATGGAGAGATGAGTTGTACGAAGAGTAACTTCGCCACCTCCCGTTGTAACTTCA
AATGTACAGCTGAGAAATATCAGTTATATCCACCTGGTGTAACCGAGAATCATTGCATGA
ATAACTCAAGGTGGAATATTGAGAAGCCGTGCTGTGCAAGATCATGTCCTCCCTTCGCTG
TGATGGACTTTGTTGTGATCCTCGATTCTTCTTCTTCTGTTGGATCCGAAAACTGGATGA
AAATAAAAACTTTCACCCACCAATTTTTATCAACTTTCATTCTTTCACCTGAAGGAAGCC
AGTACTCTGTGTTCCGGTACAACAGAAATGTTGATATCAACTCACAGATTTTGCTGAAAG
ACCATCCTACAAATATAGAGGACTTCATTTACGCATTCGAACAAATTCCATATGATGGTT
CAGGAACACACACAGGGAAAGCTATTAACCACGCAGTTGACATTGTACTTGCCCCCGGGA
ATGGAAATCGCGTCAACGCTCGTGATATTGTGTTGGTTATCACTGATGGTAAATCGCAAG
ACGACGTTGGAGGACCCGCGTTAAGACTTCGGCAAACAGGAGCAACTGTATTTGTCCTCC
CCATTATGCCACCTAAGGGAAGATTAGACATGAGACAAGTCCGACAGATCGCAGGATCGG
AAGACAACATCATAAAGGATGCAATCGAAGGAGGGTTCGAAGCACTCACTGAACATTTCT
CAAAGAAAGTGAGCAACATCATATGTGGAAACCCATGTAAACATGTTTTACACGACCATC
TGGCTTTGTAATGTAATTTTCTCATGATTGTGATGTAACAATGTTGTTTTTGTTATGTCA
CAACATCTTAATTGTGGCATAATATTCTCTTTGTTTTATCAATTAAAATAGCTTTTTCCT
ATTAATCTGCTTTTAATGATTAAAAACTTTTAATGATACTGATTTTGAAACTAATCAAAT
CATTGTAAATGATATGTTTTTCTGATTTTTAATTATTTATATTATTCTGATTCTTAATTT
TGATTTGGAATTGCCATTATTTTTGTTGTGTGTCAATTTATTTTGCTTTGTTGTTTAAAA
TAAAGAAACAAACATTTTGAAATAC
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[122-181] 10.219 - T[182-241] 9.711 - T[242-309] 9.773 - T[310-374] 8.821 - T[375-440] 9.038 - T[441-506] 8.531 - T[507-570] 7.112 - T[571-632] 7.837 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[124-179] 3.1E-11 - T[184-239] 2.5E-10 - T[244-307] 1.2E-10 - T[313-372] 3.9E-6 - T[377-438] 7.3E-9 - T[443-504] 1.3E-8 - T[509-568] 7.5E-5 - T[573-630] 4.7 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[126-180] 6.72563E-11 - T[186-240] 6.66016E-11 - T[244-308] 2.10824E-9 - T[314-373] 5.74336E-7 - T[379-439] 1.71802E-7 - T[445-505] 3.20192E-6 - T[513-569] 7.74235E-5 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[128-187] 2.36E-13 - T[188-249] 6.81E-15 - T[242-314] 9.31E-12 - T[316-379] 4.45E-11 - T[382-447] 2.78E-12 - T[447-510] 1.21E-10 - T[515-582] 6.53E-11 - T[571-637] 8.9E-6 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[129-179] 8.4E-10 - T[191-239] 1.2E-8 - T[244-307] 1.7E-7 - T[316-372] 5.3E-6 - T[377-438] 2.9E-4 - T[450-504] 2.1E-5 - T[525-568] 0.0014 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[634-828] 3.34E-37 |
| SMART |
VWF_A (IPR002035) - T[639-826] 3.6E-23 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[639-833] 2.4E-34 |
| Pfam |
VWF_A (IPR002035) - T[641-800] 3.7E-27 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[641-822] 22.95 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SVEP1_HUMAN | 25.655 % | 137 | 9.77E-33 |
| LYAM3_HUMAN | 31.395 % | 191 | 1.26E-50 |
| CSMD1_HUMAN | 27.66 % | 145 | 2.17E-35 |