- EST 'BW407477' >
- Transcript 'Moocul.CG.ELv1_2.S11...' >
- Clone 'cicl077j07' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C11.28.v1....'
Transcript Model
Transcript Id
KH2012:KH.C11.28.v1.A.ND1-1
Possible name(s)
LAMB1; LAMB2; LAMB4
Gene model
Location
KhC11 [1,163,180 / 1,172,924]
Amino acid sequence
Length: 671
>KH.C11.28.v1.A.ND1-1
MLFRNFVIFIAVVVSGIFSQEIFEDLKHEECLLDIDLIILLDGSHSVKLSNFNIVKEWVK
QLAAGMHIGHGHIQIGVVQYSHWYHNRPLNNQRYIKTEIELGEHMNKDDFDRAVDRIKYQ
GFKTYTAHAINKTLEFDFLGPKNRYPDAKRALILLTDGKATDSSYLPDVIQHAERDRGVI
IYAVGVGDFDSSELQLITHHHENREFELENFEDLDSIVNSLQFQLATACDCDLEGSITED
CNPCSGECTCKTNVVGRRCDACANATYGLGDSGCQACKCNPLGTIDPLIDCDVTTGQCLC
RPDVTGRACDRCVEGFYGFPECRPCECGGHSVSCDQVTGVCTSCDGMRTGDHCERCIAGH
FSDNDQCVPCNCNGNIDRSDPDACDPNTGKCLKCLHNTQGPRCEQCKDFFFGDALSNSCT
RCECDVTGTDSSTCNSNGECRCGADGECSCLPNFEGTSCDSCVAGSWRSSSELACQKCAC
QNIGIVVNSTCDAATGQCVCKGEYRGKSCESCAAGYVRRSADEACTEPEPTEPPSAIVLP
VTHRPRPTPIRVNPGWSPCVSCGGQKWPSYCHGRMCRRRWPYHQFQPSPRRCYAGNWGCR
MNYNQYRPTSYTGYRNSPSYRSAPRYMNTYQPSYRRPSYYRGYYNHPRSGGYRYRNNYQY
NQPVKYGLYRS
Nucleotide sequence
Length: 2,501
>KH2012:KH.C11.28.v1.A.ND1-1
ATGTTATTTCGCAATTTTGTAATTTTTATAGCTGTTGTTGTTTCGGGTATATTTTCTCAA
GAAATATTTGAAGACTTGAAACACGAAGAATGTCTTCTCGATATTGACTTGATTATCTTA
CTTGACGGATCGCATTCGGTTAAACTTTCAAATTTCAATATCGTAAAGGAATGGGTGAAG
CAGCTGGCTGCAGGAATGCACATTGGTCACGGACACATACAAATTGGAGTAGTTCAGTAC
TCTCATTGGTACCACAATAGACCGCTCAATAATCAAAGGTATATCAAAACTGAAATCGAG
CTTGGTGAGCATATGAATAAGGACGATTTTGACAGAGCTGTGGATAGAATCAAGTACCAA
GGATTCAAGACTTACACCGCCCACGCAATAAACAAGACACTTGAATTTGATTTCCTGGGA
CCCAAGAACCGATACCCCGACGCTAAACGAGCGTTGATTCTTTTAACAGATGGAAAAGCA
ACAGATTCATCATACTTGCCGGATGTCATTCAACACGCAGAAAGGGACAGAGGGGTTATC
ATATACGCTGTCGGTGTGGGTGATTTTGACTCCAGTGAGCTACAGCTTATAACACACCAT
CATGAAAACCGAGAATTTGAACTTGAAAATTTCGAAGACCTCGATTCGATCGTAAACAGT
CTTCAATTTCAACTTGCAACAGCTTGCGATTGTGATTTGGAGGGAAGCATTACTGAGGAT
TGTAATCCATGCTCGGGCGAGTGCACTTGTAAAACCAATGTTGTGGGCAGAAGATGTGAC
GCTTGTGCGAATGCCACCTACGGCCTAGGAGACTCCGGATGCCAAGCTTGTAAGTGCAAT
CCGTTGGGAACGATAGATCCTTTAATAGATTGTGACGTCACAACCGGACAGTGTCTTTGC
CGGCCTGACGTCACCGGTCGTGCCTGTGATCGCTGCGTAGAAGGTTTTTATGGTTTCCCT
GAGTGCAGACCATGCGAGTGCGGAGGCCACTCTGTCTCTTGCGATCAAGTCACCGGAGTT
TGTACATCATGTGATGGAATGCGAACTGGCGACCACTGCGAAAGATGCATTGCTGGCCAC
TTCTCCGATAACGATCAATGTGTTCCGTGTAATTGCAACGGAAACATTGATCGTTCAGAC
CCGGATGCTTGCGACCCAAACACAGGAAAATGCTTAAAATGTTTGCACAACACACAGGGT
CCAAGGTGCGAGCAATGCAAAGATTTCTTCTTTGGCGATGCTTTGAGCAACTCTTGCACA
AGATGCGAGTGTGACGTCACAGGAACCGATTCTTCTACGTGCAACAGCAATGGTGAATGT
AGATGTGGTGCAGATGGTGAATGCTCCTGTCTTCCTAACTTCGAAGGCACTTCATGTGAT
TCCTGTGTTGCTGGATCGTGGCGGTCGAGCTCCGAACTGGCATGCCAGAAATGCGCCTGT
CAAAATATAGGAATTGTGGTGAACAGCACATGCGATGCGGCTACTGGTCAGTGCGTTTGT
AAAGGAGAGTACAGAGGAAAATCTTGTGAATCTTGTGCTGCTGGCTACGTGAGAAGAAGC
GCTGACGAGGCTTGCACAGAACCAGAGCCGACAGAACCACCTTCCGCTATTGTACTACCA
GTTACACATCGTCCGCGTCCGACGCCGATTCGAGTAAACCCCGGCTGGAGCCCTTGTGTG
TCGTGTGGGGGACAAAAATGGCCGTCGTATTGCCATGGTCGCATGTGTCGACGTAGATGG
CCTTACCACCAATTCCAGCCTTCACCTCGTCGATGCTATGCAGGGAATTGGGGATGTCGT
ATGAATTACAATCAGTACAGACCAACTTCCTACACGGGTTATCGGAACAGCCCAAGTTAC
CGCAGTGCTCCGAGATATATGAACACCTACCAACCATCATATAGGCGACCCTCTTACTAC
CGTGGGTATTACAACCACCCTCGTAGTGGGGGATATCGCTATCGCAACAACTACCAATAT
AATCAACCTGTAAAATACGGATTATACAGAAGTTAAACCACAGAGAAGATTTTTCTGAAA
GATGCTTTATTGGGGGAATGTTCGGCATTCAAAATACTGCTGTAATATAATAACCAAAGA
ATAAATCGCTATTTCAACATCATGTTAATAAACATATTCAGTATTATAAAGTGAAATTAG
CGTTGTTGTTCCGTTGCATGCTAAGCTATAACAAGGTATAGGTTAGCGCAGAGTGCTTGT
ATTAGCTTATAAACCTGTAACGGAATAAATACATAATTGGATGTATGCCACACGAAGATA
AGACAAGTTGCATTCATTCACTTACCATGCTACCAATGTTTGCACGTCCACCAACATAAG
GCCATCGCCAATTTAATCTATCTCGAATTGTGTTTGTTGCCTAAATGGGCAGTCGTGTAA
AGGAGGTATACACCAGATACTCACAAAGTTTGAAAGTTACATATATAGAAAAAAGTCAAA
TCCAATCTAGTTCAGTTGAATTGTAACAAGAGCTTGACGTT
| Gene3D |
vWFA_dom_sf (IPR036465) - T[24-228] 4.4E-41 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[31-224] 5.79E-40 |
| SMART |
VWF_A (IPR002035) - T[34-226] 1.1E-29 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[36-221] 25.292 |
| Pfam |
VWF_A (IPR002035) - T[36-219] 1.2E-29 |
| SMART |
Laminin_EGF (IPR002049) - T[229-274] 2.0E-9 - T[277-322] 1.6E-12 - T[325-367] 5.5E-4 - T[370-419] 2.7E-13 - T[422-475] 2.4E-4 - T[478-525] 5.2E-6 |
| Pfam |
Laminin_EGF (IPR002049) - T[229-271] 2.9E-7 - T[277-321] 1.4E-11 - T[325-364] 1.0E-4 - T[370-419] 1.6E-10 - T[422-472] 8.1E-6 - T[478-525] 2.1E-7 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[229-276] 17.757 - T[277-324] 19.833 - T[325-369] 9.874 - T[370-421] 18.024 - T[422-477] 12.064 - T[478-527] 9.474 |
| SMART |
EGF-like_dom (IPR000742) - T[290-323] 99.0 - T[383-420] 44.0 - T[423-460] 15.0 - T[474-510] 110.0 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[298-327] . - T[391-424] . - T[498-525] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[448-459] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMB1_HUMAN | 35.556 % | 214 | 1.61E-58 |
| LAMB2_HUMAN | 38.611 % | 234 | 2.53E-65 |
| LAMB4_HUMAN | 32.985 % | 187 | 9.24E-50 |