Aniseed - Transcript Card

Transcript 'KH2012:KH.C5.23.v2.A...' >
Transcript 'KH2012:KH.C1.129.v1....'

Transcript Model

Transcript Id

KH2012:KH.C1.129.v1.A.SL1-1

Possible name(s)

RHOA; RHOB; RHOF

Gene model

KH2012:KH.C1.129

Location

KhC1 [7,845,995 / 7,848,803]

Sequences

Amino acid sequence

Length: 256

>KH.C1.129.v1.A.SL1-1
SQNYTQTMERIPNDVKGAFPEQQPKIKCVIVGDGGCGKTSMLVVYTEGEFPEVYTPTVFE
NYSREVELNRKKAVLTLWDTAGQEDYDRLRPLSYNNADIIIICYDVTNLSSFQNVEIRWS
PEIRHFCPHTPTMLVACKTDLRSQVNSDSISNSMTRSASMATTLTTTGVDLTEMTSSTLS
VNSVRAEDGTDRHDDQAIVTTEMGEKMSKHINVNHFVECSAKDGTNIEQVFKLAIECVIK
REAKVGPKNCCCCLLL

Nucleotide sequence

Length: 1,604

>KH2012:KH.C1.129.v1.A.SL1-1
TGACTGGCATCACTTCTTAGAATGTAGTTGCTAATTTTAACTTGTAAAGCCAAAACTATA
CACAAACAATGGAAAGGATACCCAATGACGTCAAAGGTGCTTTCCCCGAGCAGCAACCCA
AAATTAAATGTGTTATAGTTGGGGATGGTGGATGCGGTAAAACTTCAATGCTGGTTGTAT
ATACGGAAGGCGAATTCCCTGAAGTGTACACGCCCACGGTGTTTGAGAATTACAGCAGAG
AGGTGGAATTAAATCGAAAGAAGGCGGTGCTAACATTGTGGGATACGGCGGGTCAGGAAG
ATTATGACCGGCTTCGACCTCTCTCTTACAACAACGCAGACATCATAATCATCTGCTATG
ACGTCACAAACCTTTCAAGCTTCCAGAACGTAGAAATCCGATGGTCGCCAGAAATCCGCC
ATTTTTGCCCCCACACGCCTACGATGTTGGTTGCGTGTAAAACTGACCTGAGGTCTCAGG
TGAACTCGGATTCAATTTCAAACTCTATGACTCGATCTGCTTCCATGGCAACCACATTAA
CAACAACTGGAGTAGATTTAACAGAAATGACGTCATCTACGTTAAGTGTAAATTCGGTAC
GCGCAGAAGATGGAACAGACAGACACGATGATCAGGCAATAGTTACAACCGAAATGGGCG
AGAAGATGTCGAAACACATCAACGTCAATCATTTTGTTGAATGTTCTGCCAAGGATGGCA
CAAACATTGAACAAGTATTTAAACTTGCAATCGAATGCGTCATTAAACGTGAAGCAAAAG
TCGGTCCAAAAAACTGCTGCTGTTGTTTGCTATTGTGATACGCTGTTACGTAAATAAATT
GACTGTGTAGGAAATGCCTAACAAATCAATCGCGCGCAATATTTACTTTTTATTTATACA
AATAAACCTCTTACTTTCAACTCCTGACCTCTGGCTTCAAAAACCCTAACCCTTAAAGAC
AAATTGCAACAGAGCGAATTGTTTATAACACGGAATATTTGCGTACCATTTCATATTTTC
TATATTATACCTGCCAGTGAGACCCTCCGACCACTTGTTAACACGCTATAGGTCATTTTG
TTTAATTTAACGTGCTATAATTCCAGTCAAACTTTTTTTGTAGTGTAGAATCAAATCTCC
TATCGTTGCCGTCGCTTGTATAAATATTTTCTAAAACAAGCTTTTATGATTTATCATACG
TTGCAATTATATTATGCCTTTTGGAATTCCGCAACTTATTGTTCGCACTTTATTCGTTTG
TTCATTCCACCGTAACTGCCATTTTCATGGACTTCTGAATTTTCGTCAACTTTTTATACG
TATACCGTGGTCCCTAAAAAAACGTATAATATATAACCTAAACTTTTCTTTAAACACACA
CAATCTTTGCTACTTTCTGTACATGTTTGACAAAACTTACTATTCTTTACACCTCTGTTT
TAGTTTAAATACGGAGCATGAATATTGTTTTTAAAAAAAGTATAAGAAGTGCTTTTAAAT
TATTAACATTGCAAATCTGCAGTTGTGTTGATATAAGTGAAAGACAATTTCCAATATGCT
GAACGAACATCCTTTTCTCAAGTCGCTTCTGCAAAACCAATAGC

InterProScan

ProSiteProfiles	Small_GTPase_Rho (IPR003578) - T[19-238] 23.037
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[25-170] 4.8E-29
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[25-150] 2.55E-52 - T[191-238] 2.55E-52
Pfam	Small_GTPase (IPR001806) - T[27-238] 4.8E-51

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RHOA_HUMAN	38.428 %	172	4.93E-54
RHOB_HUMAN	38.362 %	173	2.27E-54
RHOF_HUMAN	39.485 %	172	1.04E-53