- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C11.349.v3...' >
- EST 'AHC0AAA235YJ16_RM1' >
- Transcript 'KH2012:KH.C4.356.v1....' >
- Transcript 'KH2012:KH.C11.349.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.349.v1.A.SL1-2
Possible name(s)
AC011530.1; DMWD; WDR20
Gene model
Location
KhC11 [5,140,778 / 5,146,070]
Amino acid sequence
Length: 678
>KH.C11.349.v1.A.SL1-2
CCNVVNVENIAWIKMSAEGGIRDGNVKVHFNTREGVYKQMPISEYFYPKRVPFTQGPAST
STPVKTSFVKVNDGKEDQDCVCLTVGRELFYFMYKSIKDHSQPLEFLDKRTYKGVAPTCH
DINQKSANAESVKVAVGFIAGQVQIIDVGTKQSLQIMNEDRCVEKSKVTCVRWFPNSENT
LLSAHISGFMYTYDVSQPCPNVVPQYHSHPDKVGDGYMIHSIKVKSSTSNTNGNGVGTGN
PLCRWTMTTDGSGVHNFSFSPCGRFIAIVTQNGYLRILDINTYDLLGCMKSYFGGLLSCC
WSPDGRYVVTGGEDDLISVWSFCEKNVIARGRGHKSWVNDVSFDPFCCSIPSDADMKSFY
GIPSLSEVFPDVKKSDSVNNNSPGGVEGKVEKHHERLNGDVSVPISAVKRMRTYSNISKF
SRLSIGLDSGAPAVCYRFGSVGQDSQLCIWELDETTLCFFNKTVDCGENSLTPSSDSFHA
NSEPLTESLTNLPEINGAYGVGHNGGSTQHENYLPKEVTTSSRSNSTPHSINSAKIKRSL
KHDSEQQITSGKFLTLGPHDRKKANKEHKRNLSLPHFGFKSSSSPSNQGPQKYGFQHRKH
QPTKTIVFGTPRCPKMADTAILEPLVCKKISQGQITCIDFMWDSVVTTCQDGFIQLWKRP
NSIQSPLSEGSKPSGTVV
Nucleotide sequence
Length: 2,509
>KH2012:KH.C11.349.v1.A.SL1-2
AGATATTTAATTACTTTGCCTGGATATCGTTGAAACAGTTGAAATGATGTTGCAATGTTG
TTAATGTGGAAAACATTGCGTGGATTAAAATGTCAGCTGAAGGAGGAATAAGAGACGGGA
ATGTGAAAGTTCATTTTAATACAAGGGAGGGCGTTTATAAACAAATGCCGATCTCAGAGT
ATTTCTACCCCAAACGTGTTCCATTCACACAGGGACCAGCGTCAACCTCCACTCCGGTAA
AAACATCGTTTGTGAAAGTTAACGACGGTAAGGAAGATCAAGATTGTGTTTGTCTCACTG
TGGGAAGGGAGTTGTTCTACTTCATGTACAAATCAATTAAAGATCATTCCCAACCGTTGG
AATTCCTCGACAAACGAACTTACAAAGGTGTCGCCCCGACCTGCCACGATATCAACCAGA
AAAGCGCGAACGCCGAAAGTGTGAAGGTCGCTGTCGGGTTTATTGCCGGTCAAGTTCAAA
TCATAGATGTCGGGACAAAGCAAAGTCTTCAAATCATGAATGAAGATAGATGCGTGGAGA
AATCTAAAGTAACGTGTGTAAGGTGGTTCCCCAACAGTGAGAACACGTTACTATCGGCAC
ATATAAGTGGATTCATGTACACGTATGATGTTTCACAGCCTTGCCCCAATGTAGTGCCTC
AATATCATTCACATCCGGACAAAGTCGGCGACGGCTATATGATCCACAGCATCAAGGTGA
AGAGTTCGACTTCCAACACCAACGGTAACGGGGTGGGGACGGGTAACCCGCTATGCAGAT
GGACGATGACGACCGATGGGTCAGGGGTTCACAACTTCAGCTTCTCGCCTTGTGGGAGGT
TTATTGCTATTGTTACCCAGAACGGCTACTTACGAATCCTTGATATAAACACATACGACC
TACTTGGTTGCATGAAAAGTTACTTTGGTGGTTTGCTCTCTTGTTGTTGGAGCCCTGATG
GTAGATACGTGGTAACAGGTGGAGAGGACGATCTTATTTCGGTGTGGTCGTTCTGTGAGA
AGAATGTCATTGCGCGCGGTAGAGGTCATAAATCGTGGGTGAATGACGTCTCGTTTGACC
CCTTCTGTTGTTCCATACCTTCCGATGCCGACATGAAAAGTTTCTACGGGATACCGAGCC
TTAGTGAGGTGTTTCCGGACGTTAAGAAGTCGGACTCGGTGAATAATAATTCCCCCGGCG
GTGTGGAGGGGAAAGTGGAGAAACATCATGAACGTTTAAACGGGGACGTATCAGTCCCTA
TCAGCGCGGTTAAACGGATGCGCACGTACAGTAATATATCAAAGTTTTCAAGGTTAAGCA
TCGGGTTGGACAGCGGGGCGCCAGCCGTGTGCTACAGGTTTGGCTCCGTTGGCCAGGATT
CCCAGTTGTGTATTTGGGAGTTAGATGAAACAACTTTGTGTTTTTTTAACAAAACCGTGG
ATTGCGGGGAAAACTCTTTAACGCCATCGAGCGATTCGTTCCACGCAAACAGCGAACCGT
TAACTGAAAGTTTAACCAACTTACCGGAAATTAACGGGGCGTATGGAGTGGGGCATAACG
GGGGAAGCACCCAACACGAGAACTATTTACCCAAAGAAGTGACGACGTCATCGCGGTCCA
ACAGCACCCCACACTCGATAAACTCAGCCAAGATCAAGCGCTCTCTAAAACATGACTCGG
AACAACAAATAACAAGCGGAAAGTTTTTAACACTGGGTCCGCACGACCGTAAGAAAGCAA
ACAAGGAACATAAGCGGAACCTCAGCCTCCCACACTTCGGGTTCAAATCCTCCTCGAGCC
CAAGCAACCAGGGGCCACAAAAATATGGGTTCCAGCACAGGAAACATCAGCCAACCAAGA
CAATTGTATTCGGTACGCCACGGTGCCCGAAAATGGCCGACACTGCGATATTAGAACCTT
TGGTTTGTAAGAAAATCTCCCAAGGCCAAATAACTTGCATAGACTTCATGTGGGACAGCG
TGGTAACCACGTGTCAGGACGGGTTCATACAACTGTGGAAACGACCAAATAGCATCCAGT
CCCCACTAAGTGAAGGTTCCAAACCAAGTGGTACGGTTGTATAAACAATCATTCAGATTA
TTCTTCAAACAACAAGTCTTGCTCCAATGTGCCTTTACCATGTACAGTGATTGTGCAATC
CTGGTCCATAGAAACAAAGATAGGAATTGTTGTTTCCCCAACACATAATAATTGTCATTA
TGATGAATCTCCCCATGTTGTATTGCATGTGAAAAGTTTCCAATAGTTTTAGCGCAAGCT
TTGTTTTAAAATCGTGGAAAAACCAGTCAACAAATTAATTGTTCCACACTGTTATGATTT
ACGTTCGCTGCTGGTGTAATGTTTAATTTATTCTACCAGCCAGCACTGGCTGATATTTTT
GTCAAGACGTAATTTATATTAACACGAAAATGATGAAATTTTTATGCTTCATCATGGTAT
CGTGTATGATGTTTATGCGTGCACTTGCGATTAATACATATGAATAATG
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[130-207] 2.56E-34 - T[243-348] 2.56E-34 - T[437-453] 2.56E-34 - T[621-661] 2.56E-34 |
| SMART |
WD40_repeat (IPR001680) - T[150-194] 2.2 - T[238-279] 1.4 - T[282-321] 3.2E-5 - T[324-451] 46.0 - T[623-658] 6.2 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[247-345] 14.503 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[289-330] 10.642 |
| Pfam |
WD40_repeat (IPR001680) - T[296-321] 8.1E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR20_HUMAN | 40.729 % | 442 | 3.13E-148 |
| DMWD_HUMAN | 46.691 % | 261 | 6.77E-78 |