- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C11.349.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.349.v2.A.SL1-1
Possible name(s)
AC011530.1; DMWD; WDR20
Gene model
Location
KhC11 [5,140,778 / 5,151,805]
Amino acid sequence
Length: 580
>KH.C11.349.v2.A.SL1-1
CCNVVNVENIAWIKMSAEGGIRDGNVKVHFNTREGVYKQMPISEYFYPKRVPFTQGPAST
STPVKTSFVKVNDGKEDQDCVCLTVGRELFYFMYKSIKDRCVEKSKVTCVRWFPNSENTL
LSAHISGFMYTYDVSQPCPNVVPQYHSHPDKVGDGYMIHSIKVKSSTSNTNGNGVGTGNP
LCRWTMTTDGSGVHNFSFSPCGRFIAIVTQNGYLRILDINTYDLLGCMKSYFGGLLSCCW
SPDGRYVVTGGEDDLISVWSFCEKNVIARGRGHKSWVNDVSFDPFCCSIPSDADMKSFYG
IPSLIPISAVKRMRTYSNISKFSRLSIGLDSGAPAVCYRFGSVGQDSQLCIWELDETTLC
FFNKTVDCGENSLTPSSDSFHANSEPLTESLTNLPEINGAYGVGHNGGSTQHENYLPKEV
TTSSRSNSTPHSINSAKIKRSLKHDSEQQITSGKFLTLGPHDRKKANKEHKRNLSLPHFG
FKSSSSPSNQGPQKYGFQHRKHQPTKTIVFGTPRCPKMADTAILEPLVCKKISQGQITCI
DFMWDSVVTTCQDGFIQLWKRPNSIQSPLSEGSKPSGTVV
Nucleotide sequence
Length: 2,215
>KH2012:KH.C11.349.v2.A.SL1-1
AGATATTTAATTACTTTGCCTGGATATCGTTGAAACAGTTGAAATGATGTTGCAATGTTG
TTAATGTGGAAAACATTGCGTGGATTAAAATGTCAGCTGAAGGAGGAATAAGAGACGGGA
ATGTGAAAGTTCATTTTAATACAAGGGAGGGCGTTTATAAACAAATGCCGATCTCAGAGT
ATTTCTACCCCAAACGTGTTCCATTCACACAGGGACCAGCGTCAACCTCCACTCCGGTAA
AAACATCGTTTGTGAAAGTTAACGACGGTAAGGAAGATCAAGATTGTGTTTGTCTCACTG
TGGGAAGGGAGTTGTTCTACTTCATGTACAAATCAATTAAAGATAGATGCGTGGAGAAAT
CTAAAGTAACGTGTGTAAGGTGGTTCCCCAACAGTGAGAACACGTTACTATCGGCACATA
TAAGTGGATTCATGTACACGTATGATGTTTCACAGCCTTGCCCCAATGTAGTGCCTCAAT
ATCATTCACATCCGGACAAAGTCGGCGACGGCTATATGATCCACAGCATCAAGGTGAAGA
GTTCGACTTCCAACACCAACGGTAACGGGGTGGGGACGGGTAACCCGCTATGCAGATGGA
CGATGACGACCGATGGGTCAGGGGTTCACAACTTCAGCTTCTCGCCTTGTGGGAGGTTTA
TTGCTATTGTTACCCAGAACGGCTACTTACGAATCCTTGATATAAACACATACGACCTAC
TTGGTTGCATGAAAAGTTACTTTGGTGGTTTGCTCTCTTGTTGTTGGAGCCCTGATGGTA
GATACGTGGTAACAGGTGGAGAGGACGATCTTATTTCGGTGTGGTCGTTCTGTGAGAAGA
ATGTCATTGCGCGCGGTAGAGGTCATAAATCGTGGGTGAATGACGTCTCGTTTGACCCCT
TCTGTTGTTCCATACCTTCCGATGCCGACATGAAAAGTTTCTACGGGATACCGAGCCTTA
TCCCTATCAGCGCGGTTAAACGGATGCGCACGTACAGTAATATATCAAAGTTTTCAAGGT
TAAGCATCGGGTTGGACAGCGGGGCGCCAGCCGTGTGCTACAGGTTTGGCTCCGTTGGCC
AGGATTCCCAGTTGTGTATTTGGGAGTTAGATGAAACAACTTTGTGTTTTTTTAACAAAA
CCGTGGATTGCGGGGAAAACTCTTTAACGCCATCGAGCGATTCGTTCCACGCAAACAGCG
AACCGTTAACTGAAAGTTTAACCAACTTACCGGAAATTAACGGGGCGTATGGAGTGGGGC
ATAACGGGGGAAGCACCCAACACGAGAACTATTTACCCAAAGAAGTGACGACGTCATCGC
GGTCCAACAGCACCCCACACTCGATAAACTCAGCCAAGATCAAGCGCTCTCTAAAACATG
ACTCGGAACAACAAATAACAAGCGGAAAGTTTTTAACACTGGGTCCGCACGACCGTAAGA
AAGCAAACAAGGAACATAAGCGGAACCTCAGCCTCCCACACTTCGGGTTCAAATCCTCCT
CGAGCCCAAGCAACCAGGGGCCACAAAAATATGGGTTCCAGCACAGGAAACATCAGCCAA
CCAAGACAATTGTATTCGGTACGCCACGGTGCCCGAAAATGGCCGACACTGCGATATTAG
AACCTTTGGTTTGTAAGAAAATCTCCCAAGGCCAAATAACTTGCATAGACTTCATGTGGG
ACAGCGTGGTAACCACGTGTCAGGACGGGTTCATACAACTGTGGAAACGACCAAATAGCA
TCCAGTCCCCACTAAGTGAAGGTTCCAAACCAAGTGGTACGGTTGTATAAACAATCATTC
AGATTATTCTTCAAACAACAAGTCTTGCTCCAATGTGCCTTTACCATGTACAGTGATTGT
GCAATCCTGGTCCATAGAAACAAAGATAGGAATTGTTGTTTCCCCAACACATAATAATTG
TCATTATGATGAATCTCCCCATGTTGTATTGCATGTGAAAAGTTTCCAATAGTTTTAGCG
CAAGCTTTGTTTTAAAATCGTGGAAAAACCAGTCAACAAATTAATTGTTCCACACTGTTA
TGATTTACGTTCGCTGCTGGTGTAATGTTTAATTTATTCTACCAGCCAGCACTGGCTGAT
ATTTTTGTCAAGACGTAATTTATATTAACACGAAAATGATGAAATTTTTATGCTTCATCA
TGGTATCGTGTATGATGTTTATGCGTGCACTTGCGATTAATACATATGAATAATG
| SMART |
WD40_repeat (IPR001680) - T[93-133] 4.6 - T[177-218] 1.4 - T[221-260] 3.2E-5 - T[263-353] 11.0 - T[525-560] 6.2 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[103-146] 2.5E-32 - T[182-287] 2.5E-32 - T[339-355] 2.5E-32 - T[523-563] 2.5E-32 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[186-284] 14.503 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[228-269] 10.642 |
| Pfam |
WD40_repeat (IPR001680) - T[235-260] 6.7E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR20_HUMAN | 36.467 % | 324 | 7.65E-104 |
| DMWD_HUMAN | 36.306 % | 256 | 1.09E-76 |