- Transcript 'KH2012:KH.C11.357.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.357.v2.A.nonSL8-1
Possible name(s)
CPSF4; CPSF4L; ZC3H3
Gene model
Location
KhC11 [394,519 / 399,057]
Amino acid sequence
Length: 287
>KH.C11.357.v2.A.nonSL8-1
NMQEVVANLDHVKFDLEYAIDQQLGVQPLPFTGMDKSGAPVCHFFKLSICQRGANCPFRH
VLGDKAIVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFGRCDNKDCQYQHIDPAS
KIKDCPWYDRGFCKHGATCKHRHRRKIMCMNYLVGFCPEGGKCKFVHPLWELPVSEQKGT
RCHICNEYGHKANHCHRNLATKSENGGEMNGGLVLSFNKQSPSAMQPNVKKLVDEIFEQR
SRSQQQQIKIMPRGAPRDLSRITCFRCGQKGHYASRCAELFPNLPRP
Nucleotide sequence
Length: 1,440
>KH2012:KH.C11.357.v2.A.nonSL8-1
AAAACATGCAAGAAGTTGTTGCGAACTTGGATCATGTAAAATTTGATTTGGAATATGCGA
TCGACCAACAACTTGGAGTCCAACCGTTGCCGTTTACTGGAATGGACAAATCCGGGGCAC
CAGTTTGTCATTTCTTCAAGTTAAGTATTTGCCAACGTGGAGCAAATTGTCCGTTCCGAC
ATGTGCTTGGGGATAAAGCTATCGTTTGTAAGCATTGGTTGCGAGGTCTGTGTAAGAAGG
GCGACCAATGTGAGTTTCTTCATGAATACGACATGAGCAAAATGCCCGAATGTTATTTCT
ATGCTCGATTCGGACGTTGTGACAATAAAGATTGTCAATACCAGCATATTGATCCTGCAA
GCAAGATCAAAGACTGTCCATGGTATGACAGGGGATTCTGCAAACATGGAGCTACATGTA
AACACCGTCATCGTAGAAAGATAATGTGCATGAATTACCTTGTGGGGTTTTGTCCTGAAG
GAGGAAAATGTAAATTTGTTCACCCTCTATGGGAACTCCCAGTGTCTGAACAGAAAGGAA
CACGATGTCACATTTGTAATGAATACGGGCACAAGGCTAATCATTGCCACAGAAACCTTG
CAACAAAATCTGAAAACGGTGGGGAGATGAATGGAGGGTTAGTTCTATCATTCAATAAAC
AATCCCCATCAGCCATGCAACCCAATGTTAAGAAGTTGGTTGATGAGATATTTGAACAAC
GGAGTCGAAGCCAACAACAGCAGATCAAGATAATGCCACGTGGAGCACCAAGGGACCTTA
GTAGGATAACTTGCTTCAGGTGCGGACAGAAAGGTCATTATGCGAGTCGATGTGCTGAGT
TATTCCCCAACCTTCCAAGACCATGATGACATCATAATAAAGTGAATGACATCACAATTG
TGTTGAATATGACATCACAGTGGGCAACCAGGTCCTATATTATGCAGCACTTCCCAACTC
TACATTGAGTAAATGCTTTGTCATTTACATTCAACACGTGCACCACCTCCCCCCCCCCCA
CCCCTCTAACTCTAGTTCAACCTTTTGGGTCCAACCTTGTTTTATATTGTCATGTTAACC
TTTATATTGTCCGTAGATTGACCAGTTCACTGTTGGTGTAAAATATTAACCGGCAGGTCA
TAATAAAGCCTTTATATGTTGGATTTGGAATATATGTCTTAATTCACCCACTCCAAATAT
CTGTACCATAGCAGTCAAAAGTAAAACTGGATGTCAAAGTTAATAAAGGATCCTGCTTGA
ATAAAATAGCACATTTCATGATATCTGTTTGACAAATATGTTATATGTTGCAAAAAAGTT
TCTATGATTTTTATTTGTATTTTGCTACCCATCTAAATACAATTCTTTAAACAAATGTTG
TTGTCGTAAATTAACAATGTTGAAATCTTTACCCCTAAACATGTTTTAAAGTTAAGGCAA
| ProSiteProfiles |
Znf_CCCH (IPR000571) - T[36-62] 11.16 - T[63-90] 15.375 - T[91-118] 11.685 - T[119-143] 10.305 - T[144-170] 12.605 |
| SMART |
Znf_CCCH (IPR000571) - T[36-62] 2.0E-5 - T[63-89] 1.3E-6 - T[91-117] 0.011 - T[119-143] 0.093 - T[144-169] 6.6E-5 |
| SUPERFAMILY |
Znf_CCCH_sf (IPR036855) - T[65-88] 2.22E-7 - T[146-172] 4.58E-5 |
| Pfam |
Znf_CCCH (IPR000571) - T[149-168] 1.1E-4 |
| SMART |
Znf_CCHC (IPR001878) - T[181-197] 1.2 - T[263-279] 0.0035 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[249-281] 1.92E-7 |
| Pfam |
Znf_CCHC (IPR001878) - T[263-278] 4.2E-5 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[264-279] 10.098 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZC3H3_HUMAN | 34.646 % | 85.1 | 1.81E-18 |
| CPSF4_HUMAN | 52.518 % | 317 | 3.8E-109 |
| CPS4L_HUMAN | 57.803 % | 229 | 6.17E-76 |