Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C11.369.v1.A.SL1-1

Possible name(s)

DMC1; RAD51; RAD51C

Gene model

KH2012:KH.C11.369

Location

KhC11 [3,395,129 / 3,396,444]

Sequences

Amino acid sequence

Length: 250

>KH.C11.369.v1.A.SL1-1
LNIYIKLIKMSVMQSVSENKENIEEENCGPLLINKLEQSGISAGDIKKLKEHGYHTVEAL
AYAPKKELIGVKGISTFRPERLLAVAERYGLNGADVLDNVAYARAYNTDHQSQLLIQAAA
MMSETRYAVIVVDSATALYRTDYSGRGELSARQMHLGRFLRTLLRLADEFGVAVIITNQV
VAQVDGGAMFCADPKKPIGGHIMAHASTTRLYLRKGRGDTRICKIYDSPCLPESEVMFCI
NSDGIGDTKD

Nucleotide sequence

Length: 1,024

>KH2012:KH.C11.369.v1.A.SL1-1
ATCTGAATATTTACATTAAATTAATCAAAATGAGTGTAATGCAATCTGTTTCCGAGAACA
AAGAAAATATTGAGGAGGAAAATTGTGGACCTTTGCTAATTAATAAACTTGAGCAGAGTG
GAATTAGTGCTGGGGATATTAAGAAGCTAAAGGAGCATGGGTATCATACTGTTGAGGCAT
TGGCTTATGCTCCTAAAAAGGAACTTATTGGAGTTAAAGGAATAAGTACTTTTCGCCCTG
AGAGGCTGCTAGCAGTTGCTGAGCGATATGGCCTTAACGGAGCTGATGTTTTGGATAACG
TAGCATATGCACGGGCGTATAACACTGACCATCAATCTCAACTCCTTATTCAAGCTGCAG
CCATGATGTCCGAGACACGGTATGCAGTTATAGTTGTAGACAGTGCTACAGCGCTTTATA
GAACTGACTACAGTGGTCGTGGCGAGCTTTCTGCACGGCAAATGCATCTCGGCCGATTTC
TAAGAACCTTATTGCGCCTTGCTGATGAGTTTGGCGTGGCAGTTATCATTACAAACCAAG
TTGTAGCTCAAGTTGACGGCGGAGCTATGTTCTGTGCGGACCCGAAGAAACCTATAGGAG
GTCATATCATGGCCCATGCTTCAACCACAAGGTTATATCTCCGAAAAGGGCGTGGTGATA
CAAGAATTTGCAAGATCTATGATTCTCCCTGTTTACCGGAATCCGAAGTCATGTTTTGTA
TCAACAGTGATGGTATTGGAGACACCAAGGATTAACAATATTTCTACATTACATTCCTTG
ACATAATTTTTCAAATGGCTATGATATATTGAACTTTCCTTAGACAAATGTACATCCAAC
CAACATATATTGATCTTTCTTGTAAAGTTTGTTTTAGTTTAGCGGTGAAAGTTAATTTCT
ATTTCGCATTCATGCCTTATCTCTATTTTCATCAAATTCTTGTAGATTTTTTTAACACAA
GTGATTTAAATTCAAGTTAAAATTTTTAATTCACTTTTTTTAAATCGTAAATTAAATAAA
TGGC

InterProScan

ProSiteProfiles	RecA_ATP-bd (IPR020588) - T[1-180] 18.174
SUPERFAMILY	DNA_repair_Rad51/TF_NusA_a-hlx (IPR010995) - T[25-87] 2.2E-12
Pfam	DNA_recomb/repair_Rad51_C (IPR013632) - T[73-247] 6.1E-84
CDD	Rad51_DMC1_RadA (IPR033925) - T[75-246] 1.11177E-99
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[75-247] 7.59E-37
ProSiteProfiles	RecA_monomer-monomer_interface (IPR020587) - T[187-250] 19.981

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DMC1_HUMAN	50.265 %	198	2.13E-62
RAD51_HUMAN	64.504 %	331	1.55E-114