- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'KH2012:KH.C11.311.v1...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C11.371.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.371.v1.A.ND1-1
Possible name(s)
RNF20; RNF40
Gene model
Location
KhC11 [1,636,738 / 1,646,135]
Amino acid sequence
Length: 949
>KH.C11.371.v1.A.ND1-1
NSSSGLITMASKRQLDAGPTSDSDEPQAKRPTTILPAVSIGPVASLEEMDLKMLKFQNKK
LWEKIEIRRQAERELEDQIETMEAKQTATDATLSLVNRYWDQLDENIKITLKRLGQDSDE
VVEENSTQDEEDLKKKSFHRLLCDNDFQVIKENVADRLDFSRRTFAKVIDAILDQKKQQT
SISEAIKENENVEEHLKTEVGKLEEANNNLQELTTGLQAEHHKFYMDRSNVEEKINLLEE
RVEELQETAETARWELKKTRLREDRLTRHLAEALDKINKGTLVEASTSNAAAAETETAAK
APNEQAEEAVLLAESRLNELETLKKQHQDCLKELERAKIDLRNIPDSLIIQSSEYRTLKS
QFSVLYHESVQMKTMLDESRVLIQQTRNSNLRRIEQMEVDELQTQTKLRNELIQLEDTLA
KVRHDYESLHTELEQNLAANEQAGPVNREMRHLINSLQNHNRQLKGEIQRYKRKIKDLQN
ELAKSKQEEIRRLQDEIKHESDKLFSSVKSVKLEEDVDVKKEVVEEEEEATSNQPGFKSN
PQLYQEIEDLEKKLNDKGTEMEKISKELKTTNAEMKELKLLLDMYKGLSKEQRDKAEIMA
NEKVATSARDDLEKKIRSLEEDVAREDSRSKELEKKLQRSEEQLADAVGKVKEEKDRREK
KEEELLLRGPDADSLRKMKVLEETIIELRRNLSATKQEEEALLSEMDVTGQAFEDMQEQN
MRLLQQLREKDDANFKLMSERIKANQVHKLLQEEKSVLQDQNNTLHMQVDSQNQVVRMLE
EKERSLQGTLVTMEKELNLRSQIMDLHKRKAVEMTQIREDLLRDVEKKKERLSILEESMD
RKVENLEEEHFKLSRLQEDGAKLRRKLEKHKKTEGLYSADEVLMEEIKEYKTKLRCPCCN
VNNKDAVLTKCFHVFCIKCIKTRYETRQRKCPKCNAGFGGNDFHRIYIE
Nucleotide sequence
Length: 3,278
>KH2012:KH.C11.371.v1.A.ND1-1
AGTAATAATTAAAGTTTTGTAAAGACGGGCTCTGTTTTATACGAATACTTTTGTTAAAAT
TCGTCATCAGGGTTAATTACGATGGCCAGTAAGCGACAGTTGGACGCAGGACCAACATCT
GACAGCGATGAACCGCAAGCAAAAAGACCAACGACGATTTTGCCTGCAGTCAGCATTGGA
CCAGTTGCTTCACTGGAAGAGATGGATCTGAAGATGTTAAAGTTCCAGAACAAGAAGTTG
TGGGAGAAGATTGAGATCAGAAGACAAGCGGAACGCGAGTTGGAAGATCAGATTGAAACC
ATGGAAGCAAAACAAACAGCAACTGATGCTACACTAAGTCTCGTTAATAGATACTGGGAT
CAGTTGGATGAAAACATAAAGATCACATTAAAAAGACTCGGACAGGACTCCGATGAAGTA
GTTGAAGAAAACTCAACTCAAGATGAGGAAGATTTAAAAAAGAAATCATTCCACCGGCTA
CTCTGTGACAACGACTTTCAAGTAATCAAAGAAAACGTGGCGGACAGGTTGGATTTCTCG
CGAAGAACATTTGCAAAAGTAATCGATGCTATATTGGACCAAAAGAAGCAACAAACATCT
ATTTCTGAAGCAATCAAAGAAAATGAAAATGTTGAGGAACATCTGAAGACAGAGGTTGGA
AAACTGGAAGAAGCGAATAATAATCTACAGGAACTAACTACAGGGTTGCAAGCAGAACAC
CATAAGTTCTACATGGATCGATCGAACGTGGAAGAGAAGATCAATTTATTGGAGGAGAGA
GTGGAGGAACTACAGGAGACGGCGGAGACCGCTCGCTGGGAGCTGAAAAAGACGAGGCTT
AGAGAAGACAGACTTACCCGACACTTGGCTGAAGCATTAGACAAAATAAACAAAGGAACT
TTAGTGGAAGCTTCAACTTCTAATGCTGCTGCTGCTGAAACAGAGACTGCTGCTAAGGCG
CCCAACGAACAAGCAGAAGAAGCGGTTCTTCTCGCAGAAAGTCGATTGAATGAATTGGAA
ACATTGAAGAAGCAACATCAGGATTGTTTAAAGGAGTTGGAACGAGCGAAAATTGATTTA
CGCAATATCCCTGATTCTCTCATCATCCAGTCATCCGAATATCGAACCCTTAAGTCCCAG
TTCTCGGTGTTATACCATGAAAGTGTTCAGATGAAAACAATGTTGGATGAATCGCGGGTC
CTCATTCAACAGACAAGGAATTCAAACTTGAGGAGAATTGAACAAATGGAGGTTGATGAA
CTTCAAACACAAACTAAACTTCGTAACGAACTCATCCAGTTAGAAGACACGCTTGCCAAG
GTGAGACACGATTACGAGTCTCTACACACCGAACTTGAACAAAACCTCGCAGCCAATGAG
CAAGCGGGGCCAGTGAACCGTGAAATGCGTCATCTGATCAATAGTCTACAAAATCACAAC
AGACAGTTGAAGGGAGAGATCCAACGATACAAACGTAAAATTAAAGATCTACAAAATGAA
CTTGCAAAATCTAAACAAGAAGAGATCCGGAGGTTGCAAGATGAGATCAAACATGAGTCG
GATAAACTCTTTTCATCAGTGAAGTCGGTCAAGCTGGAGGAAGATGTTGACGTGAAGAAA
GAAGTTGTGGAAGAGGAAGAAGAAGCAACAAGCAACCAACCTGGGTTTAAATCAAATCCC
CAACTTTACCAAGAAATTGAAGATCTTGAAAAGAAATTGAATGACAAGGGAACGGAGATG
GAAAAAATATCAAAAGAACTCAAAACAACAAATGCTGAAATGAAAGAATTGAAATTATTA
CTTGACATGTACAAGGGATTGTCTAAAGAACAAAGGGACAAGGCAGAAATAATGGCGAAT
GAAAAAGTTGCAACATCTGCCAGAGATGATCTTGAGAAGAAGATCCGATCGTTGGAGGAA
GATGTTGCTCGTGAGGATTCGAGGAGCAAAGAGTTGGAGAAGAAGCTACAGAGATCGGAG
GAGCAACTTGCGGATGCGGTAGGGAAGGTGAAGGAAGAGAAAGATAGGAGAGAGAAGAAA
GAAGAGGAGCTTCTACTTAGGGGTCCGGATGCTGATTCATTGAGAAAGATGAAGGTATTG
GAAGAAACGATAATCGAGCTTCGGCGCAATCTCTCGGCCACCAAGCAAGAGGAGGAAGCT
CTTCTATCGGAGATGGATGTCACGGGACAAGCGTTCGAGGATATGCAGGAACAAAACATG
AGGTTGCTGCAACAGCTACGTGAGAAAGATGACGCAAACTTTAAACTTATGTCTGAGAGA
ATAAAAGCCAACCAAGTTCACAAACTTCTACAAGAAGAAAAAAGTGTTTTACAGGATCAG
AACAACACGTTGCATATGCAGGTTGACTCCCAGAACCAAGTAGTCCGGATGTTGGAGGAA
AAAGAGCGATCCTTACAAGGAACCCTCGTCACTATGGAGAAGGAACTTAACTTGAGGTCG
CAGATCATGGATTTGCATAAGAGAAAAGCAGTAGAGATGACACAGATTCGCGAGGATTTG
CTCCGAGATGTTGAGAAGAAGAAAGAGAGGTTGTCTATCCTGGAGGAATCCATGGATAGA
AAAGTTGAAAATCTCGAGGAAGAACATTTCAAACTAAGTCGATTACAGGAGGATGGGGCA
AAACTCCGTCGTAAGTTGGAGAAACATAAGAAGACAGAAGGATTGTATAGTGCTGACGAA
GTGCTTATGGAGGAAATCAAGGAATATAAGACAAAGCTGAGATGTCCATGTTGTAATGTG
AACAACAAGGACGCCGTGTTAACCAAATGTTTTCATGTGTTTTGCATCAAATGCATCAAG
ACAAGATACGAAACACGACAGAGAAAATGCCCAAAATGCAACGCAGGGTTTGGTGGAAAT
GATTTCCATCGTATTTATATCGAGTAGTAGAGCCCATTGACCCAATGGTTCCAAAAGTGG
GCTTTACTAAAAGGGCGAATTACACTGGTTTACAATGCATTTTTGGCTGCTTTTGCATTA
TTGCAGTTAGGATTATTTTGACAAAATCTGTATTAATTAATGCGAAACATTTGGGTGCGC
AAAAACAGCCTTAAAAACATTGGGTTTAAATGTTTAAAATGCCCGAGTAGAAATGTATAA
GTTTCAGTTTCCATTTAATTGAAATACAGAAAACAGTTTATGCTATTTTAACATACCAAG
CCTTCCCTTGATAATTGTGAAAAAATGATCTTATCCAACTGTTTATGCATGGCAGTATGA
AAGATCTACGTCATTTCAATTAAAAAATCCTTGGTATT
| PANTHER |
E3_ubiquit_lig_Bre1 (IPR013956) - T[21-948] 8.3E-265 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[876-949] 1.7E-17 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[896-935] 10.557 |
| SMART |
Znf_RING (IPR001841) - T[896-934] 0.0019 |
| Pfam |
Znf_C3HC4_RING-type (IPR018957) - T[896-934] 8.5E-5 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[911-920] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRE1B_HUMAN | 41.87 % | 672 | 0 |
| BRE1A_HUMAN | 51.111 % | 359 | 7.01E-109 |