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- Transcript 'KH2012:KH.C8.356.v1....' >
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- Transcript 'KH2012:KH.C11.389.v2...'
Transcript Model
Transcript Id
KH2012:KH.C11.389.v2.B.SL2-2
Possible name(s)
HMCN1; HMCN2; NPHS1
Gene model
Location
KhC11 [3,144,111 / 3,156,020]
Amino acid sequence
Length: 1,642
>KH.C11.389.v2.B.SL2-2
FKYKSRNTNTRMPQPEEVMAVDRKILCGLLFITSMVVFVAGSEEGRAYFFRQPSNMTVNA
GDPEVIIQCHIKNFEGDVMWSKDGFAFSKPNNSPFPRYSFVQTGQHQGLRIVNIQPEDDG
EYNCQASTKFVRLRSRNARLTVLVAPQSLEISPMNSGLINVQENKHVTIECRASDARPTA
IVTWSVGINNEEPNAHNSQATSPETKLATTTSSITMSPTRSDNGTILRCFARNSATAFTR
SGTTVTSQLRHLVRPQDHGKTVTCAASSLALYIPLTTSVTLNVHYAPASVDIVQHPREGA
IENTTLTLSCTATKSNPPSVLTWLKNEGPIVENGNGIIVSTVSFRSSIRTSLTLSSVKRA
NANDIYTCKAEVPELAFVKMTKVPLKILFPPTSVHLIMHHPKPVAGVVTNLEAGQTVQLL
CQSQGGRPTPTLTWTKNGNPVADDGRKTRILPGTTVCREIGSNCNILEIVLDETDNLAEY
ACLATHVASRTPKRSTMTLQVLFLARALTVEQSPESLASDEAVSFICETSSSNPASAITW
YRDGSLISTAKVEKLTTRDGRNGGMISNSRIRFIPNYTFNGARITCRAENPILRKSTEKS
LTMNVEFSPRFAKKIFRFAATEGKREIEIFIPVRGNPSNMTYLWSRLIPSQRNSAIGQLI
LAPTRTPEKDEVPIWRTVALANDHRITWSENEGILRIRNVHLSDAGMYQLKAINTRGESS
INVLFSVYYAPRISDLSGPKTVVIGDDVIMTCTIDSLPLTTNVQWIKNIPNPERLVYDVT
TKPGTSRLMIRNVTQSDRGTYRCIAANGVGTAGTSEFKLSIKFGAVIDRRNTPIKVARPP
PTGVRKRVAIVCRAFGNPDVTFQWKDENGTVIHAGSAQSFDTQYVSEFRRHDHDLFSSTL
YINVAHLKGGFYVTKFTCDVTNSLGFDRTYISIVPMGVPDTPTELRITNHTFDAITVAWR
PAFDGGKKQSFVLQYKKSQQSSGEQKERTTWQQAVIPGGITSHSMLGLEPKTSYLVRIHA
NNSFGFSHPTDYIIATTTAEYDSSTSAAGMSIILVIVISASCGLALMIVVAASMCCFKRN
NVSYVKRANRSPGQCSRNSGTMASDQGTLVSTCRSKGSRSASPPSHRSGGSGKSQDSVSN
SSNECGDNRADGHMRKNQKSFSRTSRDSTLTCKNYANYEAEVRAGFRQLTSSASFQHDTK
PAFARRQYTTDCRMSGRPRRANSVSSIDYREDVERYCSEINGREFSVPLCRHGVSWDATC
DQCKLERFERTGLRSSARGAETLNHCSSKRYTGKPRGYYTMRQQSTRSKLSDHTLYPIHD
ADSCHYVNEPNCQANFLHEIGENVPLGSYPVTSTSSMARHPFTQTVAEISPIQHANVSAP
APAENLYQSRDLAALYAVNVQAGMAIQANSNSGGLYVLGLEESQVRPSRPSYPEITTPEE
SDSDTRHRVSFRKDCVPADELEKDVTIDTSSVPPLSVRLGITTSGAACVRNSWISSSSSM
SDYQQNQKDQQFYTDSGVEVSMGFKPSPGSSKNGSLSNHDDIACTSDKSSVMSMSSSASS
TKPLLPNSCVGKRSGPSPPLNFRDSPGKANDNELQKSAFLLQCSAGKRPQEDMETENLLN
SGLNVEHNVAFLGVDDDGTLFI
Nucleotide sequence
Length: 5,212
>KH2012:KH.C11.389.v2.B.SL2-2
CTTCGTAAACACAATTGCATTAGGTGGCCTGATTCAAATATAAGTCTCGGAATACGAATA
CAAGGATGCCACAGCCCGAGGAGGTTATGGCTGTCGATCGTAAAATACTATGTGGATTAT
TATTTATTACTTCCATGGTCGTTTTCGTGGCTGGCTCGGAAGAGGGCAGAGCTTACTTCT
TTCGACAACCGAGTAACATGACGGTCAATGCTGGCGACCCTGAGGTTATTATCCAGTGTC
ACATCAAAAACTTCGAGGGAGACGTGATGTGGTCTAAAGATGGGTTCGCATTTTCAAAGC
CAAACAATTCGCCTTTCCCAAGATATTCTTTCGTACAAACTGGCCAACATCAAGGTCTTC
GAATTGTAAATATTCAGCCAGAAGATGACGGTGAATACAACTGCCAAGCTTCGACCAAGT
TTGTTCGTCTTAGATCCCGCAACGCACGCCTCACCGTGCTAGTGGCACCACAAAGTTTGG
AGATTTCCCCAATGAATTCCGGCCTTATTAACGTACAAGAGAACAAACATGTAACTATAG
AGTGCAGAGCCTCAGATGCGAGACCCACAGCCATTGTTACTTGGAGTGTCGGAATTAACA
ACGAAGAACCAAATGCCCACAACTCTCAGGCTACCTCTCCTGAAACGAAACTGGCTACGA
CAACAAGTAGTATAACCATGTCTCCCACAAGAAGTGACAACGGAACTATTCTTAGATGTT
TCGCCAGAAACTCAGCAACAGCATTCACCCGCAGCGGTACAACTGTAACGAGTCAACTTC
GTCACTTGGTACGACCACAAGACCACGGTAAAACCGTAACTTGTGCAGCTTCTAGTCTGG
CACTCTACATCCCACTTACGACCAGCGTTACTTTGAATGTACACTATGCGCCTGCTTCCG
TCGATATAGTTCAGCACCCGAGAGAGGGCGCTATAGAGAACACGACCTTGACTTTGTCAT
GTACTGCAACTAAAAGTAATCCACCTTCCGTCTTAACATGGCTAAAAAATGAGGGGCCGA
TTGTGGAAAATGGAAATGGTATAATCGTGTCCACTGTTTCGTTTCGATCGAGCATCAGAA
CAAGCTTGACTTTGTCTTCAGTGAAACGGGCAAATGCAAATGATATTTACACGTGTAAAG
CAGAGGTTCCAGAACTCGCCTTCGTCAAAATGACAAAAGTGCCGCTAAAAATTCTCTTCC
CGCCTACATCTGTCCACTTGATCATGCATCATCCTAAACCAGTGGCAGGTGTAGTAACCA
ACCTAGAAGCAGGACAGACTGTGCAGCTGTTATGTCAATCACAGGGCGGGAGACCTACCC
CTACGTTAACTTGGACAAAGAACGGAAACCCGGTAGCGGATGATGGTAGAAAAACGAGGA
TCCTGCCTGGTACAACCGTATGCAGGGAAATCGGATCAAATTGTAATATCCTGGAAATTG
TTCTCGACGAAACCGATAACTTGGCAGAGTATGCGTGTCTTGCAACTCATGTCGCTTCAC
GGACGCCTAAAAGATCCACGATGACATTACAGGTTTTATTTCTTGCTCGAGCGCTTACTG
TTGAACAATCTCCCGAGTCTTTAGCAAGCGACGAAGCTGTTAGCTTTATCTGCGAGACTT
CATCCAGTAACCCAGCTTCGGCAATTACTTGGTACCGAGATGGTTCTCTTATTAGCACTG
CCAAAGTGGAAAAGCTTACAACCAGGGACGGTCGCAATGGTGGTATGATCTCAAATAGTA
GGATACGGTTCATTCCAAACTACACGTTTAATGGGGCAAGAATAACATGCAGAGCGGAAA
ATCCAATATTAAGAAAATCAACGGAAAAATCGCTCACTATGAACGTGGAGTTTTCGCCAC
GTTTTGCGAAGAAGATTTTTCGGTTTGCAGCAACCGAGGGCAAGCGAGAGATCGAGATTT
TTATACCTGTACGTGGAAACCCAAGCAATATGACTTACTTATGGTCGAGGCTCATCCCTT
CGCAACGAAACTCGGCGATCGGTCAGTTGATCTTGGCCCCAACTAGGACTCCTGAAAAAG
ATGAAGTTCCAATTTGGAGAACTGTCGCTTTGGCAAATGATCACCGCATTACATGGTCGG
AGAACGAAGGAATTTTAAGGATTCGTAATGTCCATTTAAGCGATGCTGGCATGTACCAAC
TGAAGGCGATTAACACACGAGGAGAATCGTCGATCAACGTTTTATTTTCCGTGTATTATG
CCCCGAGGATTAGCGACTTAAGTGGTCCCAAAACTGTCGTCATTGGTGATGACGTCATCA
TGACGTGTACAATTGATTCCCTTCCACTCACTACCAATGTGCAATGGATAAAAAACATTC
CAAATCCCGAGCGTCTCGTATATGACGTCACCACGAAACCGGGAACTAGTCGCCTGATGA
TTCGAAATGTCACACAATCTGATAGAGGGACTTATCGATGCATTGCCGCCAACGGTGTTG
GGACTGCTGGCACGTCGGAATTCAAACTTTCAATTAAATTCGGCGCAGTCATCGATCGAA
GAAATACTCCGATCAAAGTAGCACGACCGCCACCTACCGGTGTGCGTAAAAGAGTTGCAA
TCGTATGCAGAGCATTCGGCAATCCAGATGTTACGTTTCAATGGAAAGATGAAAATGGAA
CTGTTATTCATGCTGGAAGCGCTCAAAGTTTTGACACACAGTATGTTTCGGAATTCAGAC
GCCACGACCATGACCTATTTTCAAGCACTCTGTACATCAATGTAGCGCATCTTAAAGGCG
GCTTCTACGTCACCAAATTTACCTGTGACGTCACAAACTCTCTTGGGTTTGATCGTACCT
ACATTTCAATCGTCCCCATGGGCGTTCCAGATACTCCAACAGAATTAAGAATTACGAACC
ACACCTTTGATGCCATTACTGTGGCATGGCGGCCGGCCTTTGATGGCGGAAAGAAGCAAT
CGTTTGTACTGCAGTATAAAAAATCGCAGCAAAGTTCTGGCGAACAGAAAGAGCGAACTA
CTTGGCAACAAGCAGTTATTCCGGGCGGGATAACAAGCCACTCAATGCTTGGATTGGAAC
CTAAAACGTCTTACTTGGTCCGCATCCACGCCAATAACTCTTTTGGCTTCAGTCACCCGA
CCGATTACATTATCGCTACCACAACAGCTGAATACGACAGTTCTACCAGCGCAGCCGGCA
TGTCAATTATACTTGTCATCGTTATCTCTGCGTCGTGCGGTCTCGCCCTTATGATTGTAG
TGGCAGCAAGTATGTGTTGTTTCAAACGCAACAACGTTTCTTATGTAAAACGGGCAAATC
GGTCACCCGGCCAATGCTCACGTAACAGCGGCACGATGGCTTCAGACCAGGGTACTCTCG
TCTCTACTTGCAGAAGCAAAGGTTCTCGATCGGCAAGTCCGCCGTCCCATCGTAGCGGGG
GAAGTGGGAAATCGCAAGACAGTGTTTCAAACTCGAGTAATGAGTGTGGTGATAATCGTG
CCGATGGTCACATGAGAAAGAACCAGAAATCATTTTCACGGACTTCTCGCGATTCTACTT
TGACCTGTAAAAACTATGCCAACTACGAAGCAGAAGTGAGAGCTGGGTTTCGGCAACTCA
CAAGCTCAGCAAGCTTCCAGCATGATACAAAGCCTGCTTTCGCTAGGCGTCAGTACACAA
CTGACTGTCGCATGAGCGGTCGACCCCGAAGAGCGAATTCAGTGTCTTCCATTGACTATC
GTGAAGACGTAGAAAGATATTGCTCCGAAATTAATGGAAGAGAGTTTTCTGTTCCACTTT
GCCGTCACGGGGTCAGTTGGGACGCTACGTGCGACCAGTGCAAGTTGGAACGTTTTGAAC
GGACAGGACTAAGGTCATCGGCTCGTGGAGCCGAAACTCTGAACCACTGCAGCAGTAAAC
GATACACAGGAAAACCTCGTGGATATTATACAATGCGTCAGCAGTCCACACGTTCAAAAT
TATCTGATCACACACTTTATCCAATCCACGATGCAGATTCTTGCCATTATGTTAACGAGC
CTAATTGCCAAGCAAACTTTCTGCATGAAATCGGCGAAAATGTTCCTTTGGGAAGTTACC
CTGTTACCTCCACTTCATCAATGGCGAGACATCCTTTTACGCAGACCGTAGCTGAAATTT
CACCGATACAGCACGCGAATGTATCAGCGCCCGCACCAGCAGAAAACCTTTACCAGTCCC
GCGATCTTGCAGCGTTATACGCGGTGAACGTGCAAGCAGGAATGGCCATACAGGCGAACA
GCAACTCGGGCGGACTATACGTTTTGGGATTAGAGGAAAGCCAAGTCAGACCCAGCAGGC
CGTCATATCCAGAAATCACCACACCAGAAGAGTCGGACTCGGACACTCGCCATCGAGTAT
CCTTTAGAAAAGACTGTGTCCCGGCTGACGAACTCGAGAAGGATGTAACTATCGACACAT
CATCCGTACCACCGTTATCTGTTAGATTGGGAATCACAACTTCTGGTGCAGCATGTGTAA
GAAACAGTTGGATTTCATCTTCTTCTTCGATGTCAGACTACCAGCAAAATCAAAAGGACC
AACAGTTTTACACCGATAGTGGAGTTGAAGTGAGTATGGGGTTCAAACCTTCACCCGGTT
CAAGCAAAAACGGGTCGCTGTCAAACCATGATGATATTGCGTGTACATCGGATAAGTCAT
CTGTAATGTCAATGTCGTCTTCCGCCTCTTCTACAAAGCCGTTGTTACCGAACTCTTGTG
TTGGTAAACGCTCAGGACCATCTCCCCCCTTGAATTTCAGAGACAGCCCAGGCAAAGCAA
ACGACAACGAACTACAGAAAAGTGCTTTTCTACTGCAGTGTTCAGCAGGAAAAAGGCCAC
AAGAAGACATGGAAACTGAAAATTTGTTAAACTCTGGGTTAAATGTAGAACATAACGTTG
CGTTTCTTGGTGTAGACGATGACGGTACTCTGTTCATATGAGCAAGTACTTACAAAAAAA
AAAACTTTAATTCCTATTTGTTCCGCTACATTTAAAATGTGTTGCCTTGTATAGTTTACC
TGCTTTCAAACACTCCAATGAGAAACGGCCAAATAAGCGCATACATCACCCTAACATTTC
TCATAAAACATTCCACATCTTACTATGGATTTTTGATGATGGTACACCCGTAGGCCTACA
CTGCCATATGCGTTATGTTACCGTGCGCTAAAGGTGTAAATAAAACGTTTTC
| Gene3D |
Ig-like_fold (IPR013783) - T[40-145] 1.7E-18 - T[146-239] 1.1E-13 - T[240-289] 2.2E-8 - T[290-392] 2.2E-12 - T[393-503] 9.3E-15 - T[510-610] 1.4E-17 - T[611-732] 3.3E-7 - T[733-821] 1.1E-15 - T[827-931] 1.1E-7 - T[932-1048] 5.9E-17 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[47-141] 9.482 - T[146-246] 9.791 - T[287-371] 10.771 - T[403-498] 11.769 - T[505-602] 9.264 - T[731-820] 13.766 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[48-147] 1.38E-13 - T[146-237] 1.97E-12 - T[286-390] 1.04E-11 - T[410-499] 4.22E-11 - T[509-549] 1.93E-12 - T[683-732] 1.93E-12 - T[722-820] 9.79E-17 - T[836-929] 1.18E-5 |
| Pfam |
Ig_I-set (IPR013098) - T[49-142] 4.2E-9 |
| SMART |
Ig_sub (IPR003599) - T[53-143] 8.7E-9 - T[156-248] 0.023 - T[295-388] 0.0016 - T[406-502] 2.5 - T[512-728] 0.016 - T[737-822] 3.4E-10 |
| SMART |
Ig_sub2 (IPR003598) - T[59-131] 0.026 - T[162-236] 0.64 - T[301-375] 0.03 - T[412-489] 0.0057 - T[518-593] 0.24 - T[743-810] 1.4E-8 |
| Pfam |
CD80_C2-set (IPR013162) - T[151-235] 4.3E-11 - T[411-448] 2.1E-4 - T[510-596] 6.3E-9 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[924-1041] 3.11E-19 |
| CDD |
FN3_dom (IPR003961) - T[939-1037] 1.41315E-12 |
| SMART |
FN3_dom (IPR003961) - T[939-1027] 9.7E-9 |
| Pfam |
FN3_dom (IPR003961) - T[941-1029] 2.3E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[941-1040] 16.623 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 24.902 % | 120 | 3.96E-27 |
| HMCN2_HUMAN | 24.125 % | 123 | 8.99E-28 |
| NPHN_HUMAN | 26.618 % | 224 | 3.35E-59 |