- Transcript 'KH2012:KH.C11.39.v3....'
Transcript Model
Transcript Id
KH2012:KH.C11.39.v3.A.ND2-1
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
KhC11 [2,479,998 / 2,497,324]
Amino acid sequence
Length: 684
>KH.C11.39.v3.A.ND2-1
YNCFTMMEMDNGDSGGNQQNKPAETKSPYSMPGILHFIQHEWSRFEMERAQWDVERAELQ
ARIAFLQGERKGQENLKRDLIRRIKMLEFALKQERAKVHKLKFGTDISMEQKHNETNEES
KTNEMQTTNAHMSWRHGRQLLRQYLQEVGYSETILDVRSQRVRALLGNNYEVPKPTENDN
QVVNGDLSDEEVQQKSAGFVLASHGSGKSTENIFKDFNFLNAADNDEDEDVSMQEEDTTD
GGDQQRKSRAKDDFDEVDGFGDAEMALAEFDFLNPPDSEPGPIKKDLQNMLDTLRGSELN
RATEDVDIHIPDEENLPFTVGGTHIGDESIENALGLGALAGLTVANEADPLSYDISATKE
SYRKTWNPKYTLRSHFDGIRAIRFLPNESSVITASEDHTMKLWNLNKPLPSKKTQALDVE
PIYSFRGHSGAVLSLEIDTEGSSCFSGGLDSTVRVWSIPSVEIDAYDTYDPSVSQKILVG
HTDAVWSLSYSGTRQQLLSASSDCSVRLWNPTSADPLVQTYTTDGTPTSVCFVHCDSNHV
VVSHTDGKVNLYDLETGQISLVLTEGDGSSINCVVSHPTMPVTMTAHDDKHIKFYDNTSG
KLIHSMVAHLDSVTSLSVDPNGLYLLSGSHDSSIRLWNLDSKTCIQELTSHRKKFDESIY
SVAFHPSATYIASAGADALAKVFV
Nucleotide sequence
Length: 3,272
>KH2012:KH.C11.39.v3.A.ND2-1
ATAAAGTTCAGAAGACCGTCAAAACTGCTAAACGAAAACAACTAGAAAAATTGTAGCATA
AATATTGATATTGAATTCTTAGGGAATTTGTTTCCACTGTACTTGATACAACTGCTTTAC
AATGATGGAAATGGACAATGGAGATTCTGGTGGAAATCAGCAAAATAAACCAGCCGAGAC
GAAGTCTCCATACTCGATGCCAGGCATTCTACACTTTATACAGCATGAATGGTCAAGGTT
TGAAATGGAACGCGCACAATGGGACGTGGAGAGAGCTGAGTTGCAGGCACGCATTGCGTT
TCTGCAAGGTGAAAGAAAAGGGCAGGAGAATTTAAAAAGAGATTTAATTCGAAGAATCAA
AATGTTAGAATTTGCTCTAAAGCAAGAAAGAGCCAAAGTGCACAAGCTCAAATTTGGAAC
AGACATTAGCATGGAACAAAAGCATAATGAGACTAACGAGGAATCAAAAACGAATGAAAT
GCAAACAACAAACGCTCATATGTCGTGGCGTCATGGCAGGCAACTTCTGCGACAATACTT
GCAAGAGGTTGGCTACAGCGAGACAATCCTGGATGTTCGGTCTCAAAGAGTCCGTGCTCT
GCTCGGCAATAACTATGAGGTGCCGAAACCAACTGAAAACGACAATCAAGTAGTAAATGG
AGATCTATCAGATGAAGAAGTACAGCAAAAGTCAGCAGGTTTTGTTTTAGCCAGTCACGG
TTCAGGAAAATCAACTGAAAACATCTTTAAGGATTTTAACTTCCTAAACGCAGCAGACAA
CGATGAAGATGAAGATGTTAGCATGCAGGAAGAGGACACAACAGATGGAGGGGATCAACA
GCGAAAATCAAGAGCTAAAGATGACTTTGATGAGGTGGATGGTTTCGGTGACGCAGAGAT
GGCTCTTGCTGAGTTTGACTTTCTTAATCCACCTGACAGTGAACCAGGCCCTATAAAGAA
AGATCTTCAAAATATGCTTGACACTCTACGTGGGTCTGAACTCAACCGTGCAACTGAGGA
TGTGGACATTCATATTCCAGATGAAGAAAACCTCCCCTTTACTGTAGGAGGGACACATAT
TGGAGATGAATCTATTGAAAACGCTCTCGGTCTTGGGGCCCTCGCTGGATTGACAGTCGC
TAATGAAGCTGACCCTCTGTCTTACGATATCTCAGCCACCAAAGAATCGTACCGGAAGAC
ATGGAATCCAAAATACACGCTCCGGAGTCACTTTGATGGCATCCGAGCGATCAGGTTCCT
CCCTAATGAGTCCTCCGTGATCACCGCATCTGAGGATCACACCATGAAGCTCTGGAACCT
CAATAAACCTCTTCCAAGCAAGAAGACACAAGCGTTGGATGTTGAACCTATCTATAGCTT
TAGAGGACACTCTGGTGCTGTTCTCAGCCTGGAAATTGATACTGAGGGGAGTTCATGTTT
TAGTGGAGGTTTAGATTCCACTGTTAGAGTATGGAGTATACCAAGTGTGGAAATAGACGC
TTATGATACTTATGATCCATCCGTCTCCCAAAAGATCCTCGTCGGACACACGGATGCGGT
TTGGTCTCTCTCCTACTCCGGCACTCGTCAGCAATTATTGTCTGCATCATCTGATTGTTC
AGTGAGGTTGTGGAACCCAACATCAGCTGATCCTCTCGTGCAAACATACACTACTGATGG
CACACCGACATCTGTCTGTTTCGTTCATTGCGACTCCAACCATGTAGTAGTATCCCACAC
TGATGGGAAAGTGAATTTGTACGATCTTGAAACTGGACAAATATCTCTCGTCCTTACAGA
GGGAGATGGAAGTAGCATCAACTGTGTTGTGAGCCATCCAACAATGCCTGTTACCATGAC
GGCACACGATGATAAACACATTAAATTCTATGACAACACATCAGGCAAACTAATTCACTC
TATGGTGGCCCATCTGGATTCAGTGACCAGTTTATCTGTTGATCCTAATGGTCTATACTT
GTTGTCTGGAAGTCATGACAGTTCAATTCGTTTATGGAACCTGGATAGCAAGACCTGTAT
TCAGGAGCTTACTTCTCATAGGAAAAAGTTTGACGAATCAATTTACTCTGTGGCATTCCA
TCCTAGTGCCACGTATATTGCGAGTGCAGGAGCGGATGCCTTGGCCAAGGTTTTCGTTTA
ATATTCACGTGATTACTGCTCGTGAAGTAATTTTCGTGAAACAATGCTCATGAAATCTTT
TTCGTGAGACACTGCTCATGAAGTCACTTTCGTGAAACACTGCTCATGAAGTCACTTTCG
TGAAACACAGCTCATGAAGTATCTTTTGTGAGACCTTACGAAAAGACTCTATTTTCAGCG
AGTGGTACTTTTTCACATAATTTCTGGCTCACGAACTTACATGATAAAGCATTTGATTGC
AAGAATCACGTGATCATATTATTAGTTTGAGCTTTTGGGTAACCACCCCAAAAATCATGT
AAGGCTAGATTTGATATTTAACAGCTATGCTGTGTATTTTTAAGCGCATATGGCAGCCTG
CACCATTAATGCAGAGATTGGATTATCAACTCAAAACGTACACTGTTGTACCCACATGCT
AATAATGCAGTCTATAATTGTGCGCCCACATCGGTTTCCAACACCTGGTGACATGTACTC
AAAAATCCATGCGATTGTGAAATAATTCTCCTAAATTTGTACTTTTTGCACCGATCGTTT
TTTGGTGCGTTTTCAGTTTGACGGTGTAACAAACCTGTTGTTCGCGTTACACTACAGTGT
TGTTTTCTCTTAGTTGGTTCAAAGAATTTTTTTGAAGCAGTTTCATAAAAGTTCTGGTTT
TACATGTACAATTCAAGTGGCAACAAAACTCGTTTTTTTTTCTCTGAAAGTGATTTTTCA
AAAACGCTCCCCAATAATCAGTTAAATTAGCCTGGCTTTTTGTAGCCTCAGCATATATAA
GGTTCTCAAATATATCCTTGCTTACATAGTTGGGAGTTGTTTAAATTTGATTTGGCTGTA
TATCTGTTTTTAAATCTCACAAAAATTCATGGTTTTTCAACGTTTTCTACGTTTTACAAA
AAAAATCAGTTTCTGTCTGCAGTTATTTCAGGCCGAAAAGCATTTACTTTATTGAAACCT
TTATATGTGCTTGCGTAATGTCATACTACTGCCGTTTTGCTGCATTGGTGTCTAATGTAA
CAAGAAGAAATTTTATTTGGTCGTCAAAACCTTGCTGCACGGTTTTGAAGTATTAGTATT
GTGGCTTTTGAGATAATAAATGGTATATGTCA
| Pfam |
Striatin_N (IPR013258) - T[31-155] 9.2E-44 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[353-463] 9.1E-19 - T[464-522] 3.7E-9 - T[523-683] 1.8E-36 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[364-683] 2.24E-67 |
| SMART |
WD40_repeat (IPR001680) - T[365-404] 7.9E-7 - T[418-457] 3.2E-7 - T[471-510] 5.7E-8 - T[514-553] 0.35 - T[556-596] 0.6 - T[599-638] 5.8E-10 - T[641-684] 1.6E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[366-404] 7.1E-5 - T[420-457] 3.0E-4 - T[475-510] 5.4E-5 - T[600-638] 3.5E-8 - T[643-678] 0.008 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[372-684] 47.141 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[372-406] 13.316 - T[425-458] 12.681 - T[478-519] 13.616 - T[606-647] 16.423 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[391-405] . - T[625-639] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[391-405] 2.4E-6 - T[444-458] 2.4E-6 - T[625-639] 2.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 60.305 % | 486 | 2.56E-162 |
| STRN_HUMAN | 47.919 % | 664 | 0 |
| STRN4_HUMAN | 46.403 % | 589 | 0 |