Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C11.439.v1.A.ND2-1

Possible name(s)

CLVS1; RLBP1; TTPAL

Gene model

KH2012:KH.C11.439

Location

KhC11 [2,434,187 / 2,439,029]

Sequences

Amino acid sequence

Length: 321

>KH.C11.439.v1.A.ND2-1
RLTQTTSAMAGTFRRISVSQEASFTPKDHGPICGNHPIPIHTVKKAERELNETPERRQAE
VAKLREIIETRFQEATEENKSEATGVRTRFASTGDAELIKFLRARKFDSEKAYQLMKGYV
KYSIKHPDVVSDVKAKDVRQWMEKGRPGVLPTRDSQGRVILFFRLDGWDPEDLPFTEVMQ
GFVYVLEKLLESEETQINGVCLVEDFSGYTLNHVSAVGINEYRQMIDMLQGSFPCRFKGI
HCIRQPWFFAKAFGIIQPFLKAKLFERIHVLGEDLEPFYNEFRKDILPEELGGSGSAYDG
KAVAEMVLGPKTEDEDEDTAL

Nucleotide sequence

Length: 1,323

>KH2012:KH.C11.439.v1.A.ND2-1
TCCGATCCGCTTTCGATCGACATGTGACCTGAATTAACGTCAATGCGCAAGCATCATTTG
TGGTTCAATGCGTCGACCCATGAAAACAATAATTTGGATTAATTGTATGAACATGCGCGA
GGATCGCATGCACACATAAAGAAGAACGTTGGTTGGTTGTTGATATTAAAACTCCATATG
TTCCCATTCATTTCCCTGCAACCATCTGAAGACTTACACAGACGACATCTGCAATGGCTG
GAACTTTTCGCCGTATTTCTGTCTCGCAAGAAGCCAGTTTTACCCCAAAGGATCATGGTC
CAATCTGTGGCAATCACCCTATCCCAATCCATACAGTTAAAAAGGCCGAACGGGAATTGA
ATGAGACTCCGGAACGAAGACAGGCAGAAGTCGCAAAACTTAGGGAAATCATCGAAACAA
GATTTCAAGAAGCGACAGAAGAAAACAAAAGTGAGGCGACCGGGGTTCGAACCCGGTTCG
CAAGCACCGGTGATGCCGAACTTATCAAGTTTTTGCGAGCGAGAAAATTCGACTCCGAGA
AAGCTTATCAACTCATGAAAGGTTACGTAAAGTACAGCATCAAGCACCCAGACGTAGTGA
GTGACGTGAAAGCGAAGGACGTTCGCCAATGGATGGAAAAAGGACGACCAGGCGTTTTAC
CTACCCGGGACTCCCAGGGCAGAGTAATTCTCTTCTTCCGTTTGGATGGCTGGGACCCTG
AAGATCTTCCATTCACTGAAGTCATGCAAGGTTTCGTATACGTACTCGAGAAACTGCTGG
AAAGTGAGGAAACTCAAATTAATGGGGTTTGTCTCGTTGAAGATTTTAGTGGCTACACAC
TCAACCATGTGTCCGCTGTTGGAATTAATGAATATCGTCAAATGATCGATATGTTGCAGG
GATCTTTTCCATGTCGTTTCAAAGGCATTCACTGCATTCGACAGCCGTGGTTTTTTGCCA
AGGCTTTCGGTATCATTCAACCTTTTCTTAAAGCAAAACTCTTTGAAAGGATCCACGTAC
TCGGTGAGGATCTTGAACCGTTCTACAACGAATTCCGTAAAGATATCTTGCCAGAAGAAC
TTGGGGGTAGCGGTTCTGCCTACGATGGAAAAGCTGTTGCAGAAATGGTGCTAGGACCGA
AAACGGAGGACGAAGACGAGGATACGGCATTGTAATTGGAAAGATTTGATTAATAAACCT
GGTTTCAAGCGTTATTTCCACCCTACACGTTGTCTGTACACATCAGTATTCGTATTTGTC
GTCTCGATATATAGGCCTACACACATTCCTGAAAATAAATGTTATCCTGTATGTACCACA
AAA

InterProScan

PANTHER	RLBP1 (IPR032941) - T[32-317] 4.7E-128
SUPERFAMILY	CRAL/TRIO_N_dom_sf (IPR036273) - T[43-130] 2.09E-13
Pfam	CRAL/TRIO_N_dom (IPR011074) - T[90-117] 1.2E-5
SMART	CRAL/TRIO_N_dom (IPR011074) - T[94-119] 2.0E-6
Gene3D	CRAL-TRIO_dom_sf (IPR036865) - T[126-307] 1.1E-59
SMART	CRAL-TRIO_dom (IPR001251) - T[134-296] 7.3E-23
SUPERFAMILY	CRAL-TRIO_dom_sf (IPR036865) - T[137-299] 4.71E-45
ProSiteProfiles	CRAL-TRIO_dom (IPR001251) - T[138-299] 19.51
Pfam	CRAL-TRIO_dom (IPR001251) - T[142-294] 1.6E-34
CDD	CRAL-TRIO_dom (IPR001251) - T[148-293] 4.35749E-35

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TTPAL_HUMAN	33.7 %	167	3.71E-49
RLBP1_HUMAN	41.64 %	280	1.97E-93
CLVS1_HUMAN	34.286 %	174	4.71E-52