Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.144.v4.A.nonSL5-2

Possible name(s)

KHDRBS1; KHDRBS2; KHDRBS3

Gene model

KH2012:KH.C1.144

Location

KhC1 [8,220,814 / 8,231,138]

Sequences

Amino acid sequence

Length: 363

>KH.C1.144.v4.A.nonSL5-2
NRYKKKMTDLPVDSKYLPELMAEKDSIDPSFVHAVRLISSEIEKIKNPPPPAKPSNNSND
PKMFNIYDDKYPKVECNIRIPVNEFPRVNFIGRLIGPGGSTLKGIQEVTNTRIAILGKGS
LRDKKKAEELANSSDVKYNHLKYPLHVRISAIGSVDQAYMSIGRACSEVSKLLMVEDEDE
YIAAGAAAMLQARGGAVGVGGGMRGAGRGAPRGVRGGGRGAPRGSPSGSRGSSRGGRGAR
GGTRGGMRGAARGAVASRFPKAQIQAADSYVNQALEYAEAGYDVYSEYAEAAAYDPYGQA
TEEAYNESYADGAYGVTDSYDAYTFADYESYGNGAESYVPAKPAYRGFLNQAAKHTKLML
AVL

Nucleotide sequence

Length: 1,637

>KH2012:KH.C1.144.v4.A.nonSL5-2
ATTTGAAAGAAGCTGTCACCGTAGTTGTTGGGTTTTCTGCGCTATAAAGTGAAATCGTTA
CAAAAAGAAAATGACCGACTTACCAGTTGATTCGAAATATTTGCCCGAATTAATGGCCGA
GAAAGATAGCATTGACCCTTCGTTTGTTCATGCTGTTCGTTTAATATCTTCTGAAATTGA
AAAGATTAAAAACCCACCCCCACCTGCCAAACCATCAAACAATTCCAATGACCCGAAAAT
GTTCAATATTTACGACGACAAATACCCCAAAGTGGAATGCAATATTCGAATCCCTGTTAA
CGAGTTTCCTCGTGTCAATTTTATCGGGCGATTAATCGGACCTGGGGGTTCAACGTTAAA
GGGAATCCAGGAAGTCACAAATACTAGAATCGCGATTCTAGGCAAAGGGTCATTACGGGA
TAAGAAAAAGGCTGAAGAATTAGCAAACAGCAGCGATGTAAAATACAACCATCTAAAATA
TCCTCTCCATGTAAGGATTAGTGCAATAGGATCTGTTGATCAGGCTTACATGAGCATCGG
GCGAGCATGTTCCGAGGTTTCCAAACTCCTCATGGTAGAAGATGAGGATGAATACATCGC
GGCTGGAGCAGCAGCCATGTTGCAAGCAAGAGGAGGAGCAGTTGGAGTTGGAGGAGGGAT
GCGCGGAGCAGGAAGAGGAGCTCCACGTGGTGTTCGAGGTGGAGGAAGAGGGGCTCCTCG
TGGATCACCATCTGGAAGTAGAGGATCATCAAGGGGTGGAAGAGGAGCACGGGGTGGAAC
ACGAGGTGGCATGAGAGGTGCAGCCAGGGGTGCGGTAGCTTCAAGATTTCCAAAGGCACA
AATTCAAGCTGCTGATTCTTATGTTAATCAGGCATTAGAATACGCAGAGGCTGGTTATGA
CGTATACAGTGAATATGCTGAAGCTGCTGCTTATGATCCGTATGGTCAAGCAACTGAAGA
AGCATATAATGAATCATATGCTGATGGTGCGTATGGTGTAACAGATTCCTACGATGCATA
TACCTTTGCTGATTATGAATCTTATGGAAATGGGGCAGAGTCGTACGTGCCAGCCAAACC
AGCATACCGGGGTTTTCTCAACCAAGCAGCAAAACATACAAAATTAATGCTAGCAGTTCT
GTAGAGAAAGAAACTGCCCATCCATGCAAGTTGCAGTAATGTTAGCAGTTTTGTAAAGAA
ACAAACGTCCATCTGTTCAAGTTCAAGCTTATTGGGACTCGAAGATTTGAGCGGCAGAAA
CCACAAGAAACAAGTGGTATAATATTGAAGTTTGATTTTGGACAGAGAATCGAAATCTAG
AATGATAGCAGAGCTAGAAATGAGAAACTTCAAAGCAAGTTTAATATATGGATAGATGCA
ATCTGTCTCCATTTTGATGTCACTATAATTAAAAGACAGAATCAGTTCTTTAAGTGAAAT
TTATTTATGAAAACACTTGAAAAATGTTTTCCTTCTTTAGTTCAAAGATTTTCTGTCACG
TGATGGTGATTTCTCTTTGTTAAAGGTTTTATAATCTTCAAAGGTAAAACTTCTCGGTGA
TAAAAGAAATACACTGTACATGAAAAGCCAATTTTATTGACATTAAAATGTGCAACTTTT
TGTTACTGAATAAAATT

InterProScan

Gene3D	KH_dom_type_1_sf (IPR036612) - T[8-184] 9.4E-41
Pfam	Qua1_dom (IPR032571) - T[15-47] 1.1E-15
SMART	KH_dom (IPR004087) - T[72-136] 1.1E-5
SUPERFAMILY	KH_dom_type_1_sf (IPR036612) - T[76-183] 3.25E-21
Pfam	KH_dom_type_1 (IPR004088) - T[88-120] 1.7E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
KHDR3_HUMAN	36.982 %	165	6.07E-48
KHDR1_HUMAN	36.994 %	155	3.18E-43
KHDR2_HUMAN	44.048 %	149	8.35E-42