Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.144.v5.A.nonSL5-1

Possible name(s)

KHDRBS1; KHDRBS2; KHDRBS3

Gene model

KH2012:KH.C1.144

Location

KhC1 [8,220,814 / 8,225,782]

Sequences

Amino acid sequence

Length: 362

>KH.C1.144.v5.A.nonSL5-1
NRYKKKMTDLPVDSKYLPELMAEKDSIDPSFVHAVRLISSEIEKIKNPPPPAKPSNNSND
PKMFNIYDDKYPKVECNIRIPVNEFPRVNFIGRLIGPGGSTLKGIQEVTNTRIAILGKGS
LRDKKKAEELANSSDVKYNHLKYPLHVRISAIGSVDQAYMSIGRACSEVSKLLMVEDEDE
YIAAGAAAMLQARGGAVGVGGGMRGAGRGAPRGVRGGGRGAPRGSPSGSRGSSRGGRGAR
GGTRGGMRGAARGAVASRFPKAQIQAADSYVNQALEYAEAGYDVYSEYAEAAAYDPYGQA
TEEAYNESYADGAYGVTDSYDAYTFADYESYGNGAESYVPAKPAYRGKIRGGARGRGAGK
PY

Nucleotide sequence

Length: 1,670

>KH2012:KH.C1.144.v5.A.nonSL5-1
ATTTGAAAGAAGCTGTCACCGTAGTTGTTGGGTTTTCTGCGCTATAAAGTGAAATCGTTA
CAAAAAGAAAATGACCGACTTACCAGTTGATTCGAAATATTTGCCCGAATTAATGGCCGA
GAAAGATAGCATTGACCCTTCGTTTGTTCATGCTGTTCGTTTAATATCTTCTGAAATTGA
AAAGATTAAAAACCCACCCCCACCTGCCAAACCATCAAACAATTCCAATGACCCGAAAAT
GTTCAATATTTACGACGACAAATACCCCAAAGTGGAATGCAATATTCGAATCCCTGTTAA
CGAGTTTCCTCGTGTCAATTTTATCGGGCGATTAATCGGACCTGGGGGTTCAACGTTAAA
GGGAATCCAGGAAGTCACAAATACTAGAATCGCGATTCTAGGCAAAGGGTCATTACGGGA
TAAGAAAAAGGCTGAAGAATTAGCAAACAGCAGCGATGTAAAATACAACCATCTAAAATA
TCCTCTCCATGTAAGGATTAGTGCAATAGGATCTGTTGATCAGGCTTACATGAGCATCGG
GCGAGCATGTTCCGAGGTTTCCAAACTCCTCATGGTAGAAGATGAGGATGAATACATCGC
GGCTGGAGCAGCAGCCATGTTGCAAGCAAGAGGAGGAGCAGTTGGAGTTGGAGGAGGGAT
GCGCGGAGCAGGAAGAGGAGCTCCACGTGGTGTTCGAGGTGGAGGAAGAGGGGCTCCTCG
TGGATCACCATCTGGAAGTAGAGGATCATCAAGGGGTGGAAGAGGAGCACGGGGTGGAAC
ACGAGGTGGCATGAGAGGTGCAGCCAGGGGTGCGGTAGCTTCAAGATTTCCAAAGGCACA
AATTCAAGCTGCTGATTCTTATGTTAATCAGGCATTAGAATACGCAGAGGCTGGTTATGA
CGTATACAGTGAATATGCTGAAGCTGCTGCTTATGATCCGTATGGTCAAGCAACTGAAGA
AGCATATAATGAATCATATGCTGATGGTGCGTATGGTGTAACAGATTCCTACGATGCATA
TACCTTTGCTGATTATGAATCTTATGGAAATGGGGCAGAGTCGTACGTGCCAGCCAAACC
AGCATACCGGGGTAAAATACGGGGGGGTGCTCGTGGTAGAGGGGCAGGAAAGCCATATTG
AGACTTGCCTTGATGATTCAGGCAAGGAATTATTCTTAATGCACTCATGTCTGTAGCATC
TGAATAAGCTGGAAAATTCAAACCTTTATAAACATTGCGTATTTGAAGACAATTGTCCGT
GAACTGCTAAGATTTAAACTTGTGAAAATTTCATTCGAAAGCTTGAACGTTAAAAAAAAA
ACTTAAATTGTTAATATTTTAATGTGTAGTATAGCAATTAATTCATTTTAAAACTTACTG
TTTTCTTTTTCAGTATAAACTGACGCATATGGGAGCTAATGTTGAAACCCTAAGCATATT
AACTAACCCTATAATCATCAAAAACTCAAATTCAGGCAAAAATATTTCTCTAAAACTACG
CACTGCCAGTAAAATATAAAGAACCCATGCGAATGGTAGCATTTTAAATAAGGAAAACTA
TCAATAAAAACTGAAACAGCAATCTTCGAAGTTAAAAACTGTCAATAACGTCATTTTGAA
AAGCGTTTTGTATTATTATCTAAATGTTGTAAATAAAAAAGCTTTTATAA

InterProScan

Gene3D	KH_dom_type_1_sf (IPR036612) - T[8-184] 9.3E-41
Pfam	Qua1_dom (IPR032571) - T[15-47] 1.0E-15
SMART	KH_dom (IPR004087) - T[72-136] 1.1E-5
SUPERFAMILY	KH_dom_type_1_sf (IPR036612) - T[76-183] 3.25E-21
Pfam	KH_dom_type_1 (IPR004088) - T[88-120] 1.7E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
KHDR3_HUMAN	36.982 %	165	4.13E-48
KHDR1_HUMAN	34.865 %	155	2.16E-43
KHDR2_HUMAN	44.048 %	149	5.9E-42