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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C10.439.v1...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S6...' > 
  3. Region 'REG00001220' > 
  4. Molecular Tool 'EpiB::Delta2-CFP' > 
  5. Transcript 'KH2012:KH.C1.144.v5....'

Transcript Model

Transcript Id

KH2012:KH.C1.144.v5.A.nonSL6-1

Possible name(s)

KHDRBS1; KHDRBS2; KHDRBS3

Gene model

KH2012:KH.C1.144

Location

KhC1 [8,220,813 / 8,225,782]

Sequences

Amino acid sequence

Length: 362

>KH.C1.144.v5.A.nonSL6-1
NRYKKKMTDLPVDSKYLPELMAEKDSIDPSFVHAVRLISSEIEKIKNPPPPAKPSNNSND
PKMFNIYDDKYPKVECNIRIPVNEFPRVNFIGRLIGPGGSTLKGIQEVTNTRIAILGKGS
LRDKKKAEELANSSDVKYNHLKYPLHVRISAIGSVDQAYMSIGRACSEVSKLLMVEDEDE
YIAAGAAAMLQARGGAVGVGGGMRGAGRGAPRGVRGGGRGAPRGSPSGSRGSSRGGRGAR
GGTRGGMRGAARGAVASRFPKAQIQAADSYVNQALEYAEAGYDVYSEYAEAAAYDPYGQA
TEEAYNESYADGAYGVTDSYDAYTFADYESYGNGAESYVPAKPAYRGKIRGGARGRGAGK
PY

Nucleotide sequence

Length: 1,671

>KH2012:KH.C1.144.v5.A.nonSL6-1
CATTTGAAAGAAGCTGTCACCGTAGTTGTTGGGTTTTCTGCGCTATAAAGTGAAATCGTT
ACAAAAAGAAAATGACCGACTTACCAGTTGATTCGAAATATTTGCCCGAATTAATGGCCG
AGAAAGATAGCATTGACCCTTCGTTTGTTCATGCTGTTCGTTTAATATCTTCTGAAATTG
AAAAGATTAAAAACCCACCCCCACCTGCCAAACCATCAAACAATTCCAATGACCCGAAAA
TGTTCAATATTTACGACGACAAATACCCCAAAGTGGAATGCAATATTCGAATCCCTGTTA
ACGAGTTTCCTCGTGTCAATTTTATCGGGCGATTAATCGGACCTGGGGGTTCAACGTTAA
AGGGAATCCAGGAAGTCACAAATACTAGAATCGCGATTCTAGGCAAAGGGTCATTACGGG
ATAAGAAAAAGGCTGAAGAATTAGCAAACAGCAGCGATGTAAAATACAACCATCTAAAAT
ATCCTCTCCATGTAAGGATTAGTGCAATAGGATCTGTTGATCAGGCTTACATGAGCATCG
GGCGAGCATGTTCCGAGGTTTCCAAACTCCTCATGGTAGAAGATGAGGATGAATACATCG
CGGCTGGAGCAGCAGCCATGTTGCAAGCAAGAGGAGGAGCAGTTGGAGTTGGAGGAGGGA
TGCGCGGAGCAGGAAGAGGAGCTCCACGTGGTGTTCGAGGTGGAGGAAGAGGGGCTCCTC
GTGGATCACCATCTGGAAGTAGAGGATCATCAAGGGGTGGAAGAGGAGCACGGGGTGGAA
CACGAGGTGGCATGAGAGGTGCAGCCAGGGGTGCGGTAGCTTCAAGATTTCCAAAGGCAC
AAATTCAAGCTGCTGATTCTTATGTTAATCAGGCATTAGAATACGCAGAGGCTGGTTATG
ACGTATACAGTGAATATGCTGAAGCTGCTGCTTATGATCCGTATGGTCAAGCAACTGAAG
AAGCATATAATGAATCATATGCTGATGGTGCGTATGGTGTAACAGATTCCTACGATGCAT
ATACCTTTGCTGATTATGAATCTTATGGAAATGGGGCAGAGTCGTACGTGCCAGCCAAAC
CAGCATACCGGGGTAAAATACGGGGGGGTGCTCGTGGTAGAGGGGCAGGAAAGCCATATT
GAGACTTGCCTTGATGATTCAGGCAAGGAATTATTCTTAATGCACTCATGTCTGTAGCAT
CTGAATAAGCTGGAAAATTCAAACCTTTATAAACATTGCGTATTTGAAGACAATTGTCCG
TGAACTGCTAAGATTTAAACTTGTGAAAATTTCATTCGAAAGCTTGAACGTTAAAAAAAA
AACTTAAATTGTTAATATTTTAATGTGTAGTATAGCAATTAATTCATTTTAAAACTTACT
GTTTTCTTTTTCAGTATAAACTGACGCATATGGGAGCTAATGTTGAAACCCTAAGCATAT
TAACTAACCCTATAATCATCAAAAACTCAAATTCAGGCAAAAATATTTCTCTAAAACTAC
GCACTGCCAGTAAAATATAAAGAACCCATGCGAATGGTAGCATTTTAAATAAGGAAAACT
ATCAATAAAAACTGAAACAGCAATCTTCGAAGTTAAAAACTGTCAATAACGTCATTTTGA
AAAGCGTTTTGTATTATTATCTAAATGTTGTAAATAAAAAAGCTTTTATAA

InterProScan

Gene3D
KH_dom_type_1_sf (IPR036612) - T[8-184] 9.3E-41
Pfam
Qua1_dom (IPR032571) - T[15-47] 1.0E-15
SMART
KH_dom (IPR004087) - T[72-136] 1.1E-5
SUPERFAMILY
KH_dom_type_1_sf (IPR036612) - T[76-183] 3.25E-21
Pfam
KH_dom_type_1 (IPR004088) - T[88-120] 1.7E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
KHDR3_HUMAN 36.982 % 165 4.13E-48
KHDR1_HUMAN 34.865 % 155 2.16E-43
KHDR2_HUMAN 44.048 % 149 5.9E-42