- Clone 'cien181606' >
- Molecular Tool 'pCi-Bra::Tbx6b' >
- Transcript 'Moocci.CG.ELv1_2.S34...' >
- EST 'BW254699' >
- Transcript 'KH2012:KH.C1.145.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.145.v1.A.nonSL3-1
Possible name(s)
DKC1; TRUB1
Gene model
Location
KhC1 [3,998,467 / 4,002,647]
Amino acid sequence
Length: 557
>KH.C1.145.v1.A.nonSL3-1
TCFALIISLLAPLVNADCFVIEIMENGKDSTKKKKKAKNVNVAEAQRSGDFLIEPEDKPP
PKLNTSDWPLLLKNHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFINLDKPANPSSHE
VVAWLRRILKVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHGVIE
NQLKLARAIETLTGALFQRPPLISAVKRQLRVRTIYQSKLLEYDMDKRLGVFWVSCEAGT
YIRTLCVHLGLLLGVGGQMQELRRVRSGIMSENDDLVTMHDVLDAQYQLDHHKDETHLRR
VISPLEKLLVSHKRIILKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAIC
LAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASLKKSMIKKGLLGKYGKP
NEKTPKDYLEGNPDFSLTDVGTIVKTPEAAEDISTAGVKRKRNSSDSSSESAPQAKIEVI
ETPVTVKKTKDGKEKKKDKKEKKEKKKAKKSKGDESLDASVLDKTAETTDGELKSPEKKK
KKKDKSEKDKKKKKTSE
Nucleotide sequence
Length: 1,834
>KH2012:KH.C1.145.v1.A.nonSL3-1
ACGTGTTTTGCTTTAATCATTTCGCTGCTTGCTCCGCTGGTGAATGCCGATTGTTTTGTA
ATAGAAATAATGGAGAATGGAAAAGACTCTACCAAAAAGAAAAAGAAGGCGAAGAATGTT
AATGTTGCGGAAGCTCAACGAAGTGGAGATTTTTTGATTGAACCTGAAGATAAACCACCA
CCAAAGCTTAACACATCAGATTGGCCACTTTTATTAAAAAATCACAATCAACTGAATATC
CGAACAAATCATTACACTCCGCTTCCTTTTGGTTGTTCACCTTTAAAACGAAATATTCAT
GAATATGTGAGAACTGGATTTATAAATCTCGATAAACCGGCCAACCCATCCTCACATGAA
GTTGTTGCTTGGTTGAGAAGAATCCTGAAGGTAGAGAAGACGGGGCATAGTGGAACACTT
GATCCAAAAGTAACTGGATGTCTCATTGTGTGTGTGGAACGAGCAACACGACTCGTCAAA
TCTCAGCAGTCTGCTGGTAAAGAATATGTCTGCATTGTAAGATTACATGGTGTTATTGAA
AATCAGCTTAAGCTGGCAAGGGCAATTGAAACCCTTACAGGAGCTTTGTTTCAACGACCA
CCTTTAATATCTGCTGTCAAACGACAACTTCGTGTGAGAACAATCTATCAGAGCAAACTA
TTAGAGTATGATATGGACAAAAGACTTGGCGTTTTCTGGGTAAGTTGTGAAGCCGGCACT
TACATTCGAACTCTGTGTGTTCATCTTGGTTTATTGCTCGGAGTTGGAGGTCAGATGCAA
GAGTTACGAAGAGTTCGATCAGGAATTATGTCAGAAAATGATGATCTTGTCACGATGCAT
GATGTGCTGGATGCTCAATATCAGCTTGATCATCATAAAGATGAAACTCATCTTCGAAGG
GTTATCAGTCCATTAGAAAAGTTGCTTGTTTCACATAAAAGAATTATTTTAAAAGACAGT
GCTGTAAATGCAATTTGTTATGGTGCAAAGATATTGTTACCTGGCGTTTTGAGGTATGAA
GATGGAATTGAAGTAAACCAGGAAATTGTGATAATCACAACAAAAGGAGAAGCAATTTGT
CTTGCAATTGCACTTATGACCACTGCCGTGATATCAACCTGCGATCACGGGATTGTTGCC
AAAATCAAACGCGTCATCATGGAACGGGACACTTACCCCAGAAAATGGGGTTTAGGGCCT
AAGGCATCTTTAAAGAAGAGCATGATCAAAAAAGGTTTGCTGGGAAAATATGGAAAACCA
AACGAAAAAACACCAAAAGATTATTTAGAAGGCAACCCTGATTTTAGCTTAACAGATGTT
GGTACAATCGTTAAAACACCAGAAGCTGCTGAAGACATTTCCACCGCAGGAGTTAAGAGA
AAACGCAATTCCAGTGACAGTTCTTCTGAATCCGCACCTCAAGCTAAAATTGAAGTAATT
GAAACCCCAGTTACTGTAAAAAAGACTAAAGATGGTAAAGAAAAAAAGAAAGATAAAAAA
GAAAAGAAGGAAAAAAAGAAAGCGAAGAAATCTAAAGGAGATGAATCCCTTGATGCATCT
GTTTTAGATAAAACTGCTGAAACAACAGATGGTGAACTTAAGTCTCCGGAGAAGAAGAAG
AAAAAGAAAGATAAATCTGAAAAGGATAAAAAGAAGAAAAAAACTAGTGAATGAAATAAT
GGACATCTTTGCTGATCACTGCCAAATTATTTTATATTTTTTTTTATTTCCTTGAATGAT
TGTGTCCACTTTGTTATTTCTGCATTTCTAGTGTTTTAAGCTGCCGTTTTTATTTGCGAC
ACGTTTAAAATACAGTGTGCCAAGGTGCGAATAT
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[28-545] 2.6E-237 |
| SMART |
Dyskerin-like (IPR012960) - T[64-122] 1.5E-33 |
| Pfam |
Dyskerin-like (IPR012960) - T[65-122] 2.7E-30 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[66-310] 8.84E-76 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[72-397] 1.8E-161 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[126-242] 6.2E-20 |
| Pfam |
TruB_C (IPR032819) - T[243-309] 9.8E-20 |
| TIGRFAM |
Uncharacterised_CHP00451 (IPR004521) - T[303-382] 2.1E-7 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[312-393] 2.04E-20 |
| ProSiteProfiles |
PUA (IPR002478) - T[312-387] 17.774 |
| Pfam |
PUA (IPR002478) - T[313-386] 2.7E-18 |
| SMART |
PUA (IPR002478) - T[313-387] 1.3E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 75 % | 660 | 0 |