- Transcript 'Cisavi.CG.ENS81.R0.1...' >
- Transcript 'Boleac.CG.SB_v3.S17....' >
- Clone 'cicl030g15' >
- Transcript 'KH2012:KH.C1.145.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.145.v1.R.ND1-1
Possible name(s)
DKC1; TRUB1
Gene model
Location
KhC1 [3,998,467 / 4,002,618]
Amino acid sequence
Length: 547
>KH.C1.145.v1.R.ND1-1
APLVNADCFVIEIMENGKDSTKKKKKAKNVNVAEAQRSGDFLIEPEDKPPPKLNTSDWPL
LLKNHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFINLDKPANPSSHEVVAWLRRILK
VEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHGVIENQLKLARAIE
TLTGALFQRPPLISAVKRQLRVRTIYQSKLLEYDMDKRLGVFWVSCEAGTYIRTLCVHLG
LLLGVGGQMQELRRVRSGIMSENDDLVTMHDVLDAQYQLDHHKDETHLRRVISPLEKLLV
SHKRIILKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLAIALMTTAV
ISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASLKKSMIKKGLLGKYGKPNEKTPKDYLE
GNPDFSLTDVGTIVKTPEAAEDISTAGVKRKRNSSDSSSESAPQAKIEVIETPVTVKKTK
DGKEKKKDKKEKKEKKKAKKSKGDESLDASVLDKTAETTDGELKSPEKKKKKKDKSEKDK
KKKKTSE
Nucleotide sequence
Length: 1,805
>KH2012:KH.C1.145.v1.R.ND1-1
TGCTCCGCTGGTGAATGCCGATTGTTTTGTAATAGAAATAATGGAGAATGGAAAAGACTC
TACCAAAAAGAAAAAGAAGGCGAAGAATGTTAATGTTGCGGAAGCTCAACGAAGTGGAGA
TTTTTTGATTGAACCTGAAGATAAACCACCACCAAAGCTTAACACATCAGATTGGCCACT
TTTATTAAAAAATCACAATCAACTGAATATCCGAACAAATCATTACACTCCGCTTCCTTT
TGGTTGTTCACCTTTAAAACGAAATATTCATGAATATGTGAGAACTGGATTTATAAATCT
CGATAAACCGGCCAACCCATCCTCACATGAAGTTGTTGCTTGGTTGAGAAGAATCCTGAA
GGTAGAGAAGACGGGGCATAGTGGAACACTTGATCCAAAAGTAACTGGATGTCTCATTGT
GTGTGTGGAACGAGCAACACGACTCGTCAAATCTCAGCAGTCTGCTGGTAAAGAATATGT
CTGCATTGTAAGATTACATGGTGTTATTGAAAATCAGCTTAAGCTGGCAAGGGCAATTGA
AACCCTTACAGGAGCTTTGTTTCAACGACCACCTTTAATATCTGCTGTCAAACGACAACT
TCGTGTGAGAACAATCTATCAGAGCAAACTATTAGAGTATGATATGGACAAAAGACTTGG
CGTTTTCTGGGTAAGTTGTGAAGCCGGCACTTACATTCGAACTCTGTGTGTTCATCTTGG
TTTATTGCTCGGAGTTGGAGGTCAGATGCAAGAGTTACGAAGAGTTCGATCAGGAATTAT
GTCAGAAAATGATGATCTTGTCACGATGCATGATGTGCTGGATGCTCAATATCAGCTTGA
TCATCATAAAGATGAAACTCATCTTCGAAGGGTTATCAGTCCATTAGAAAAGTTGCTTGT
TTCACATAAAAGAATTATTTTAAAAGACAGTGCTGTAAATGCAATTTGTTATGGTGCAAA
GATATTGTTACCTGGCGTTTTGAGGTATGAAGATGGAATTGAAGTAAACCAGGAAATTGT
GATAATCACAACAAAAGGAGAAGCAATTTGTCTTGCAATTGCACTTATGACCACTGCCGT
GATATCAACCTGCGATCACGGGATTGTTGCCAAAATCAAACGCGTCATCATGGAACGGGA
CACTTACCCCAGAAAATGGGGTTTAGGGCCTAAGGCATCTTTAAAGAAGAGCATGATCAA
AAAAGGTTTGCTGGGAAAATATGGAAAACCAAACGAAAAAACACCAAAAGATTATTTAGA
AGGCAACCCTGATTTTAGCTTAACAGATGTTGGTACAATCGTTAAAACACCAGAAGCTGC
TGAAGACATTTCCACCGCAGGAGTTAAGAGAAAACGCAATTCCAGTGACAGTTCTTCTGA
ATCCGCACCTCAAGCTAAAATTGAAGTAATTGAAACCCCAGTTACTGTAAAAAAGACTAA
AGATGGTAAAGAAAAAAAGAAAGATAAAAAAGAAAAGAAGGAAAAAAAGAAAGCGAAGAA
ATCTAAAGGAGATGAATCCCTTGATGCATCTGTTTTAGATAAAACTGCTGAAACAACAGA
TGGTGAACTTAAGTCTCCGGAGAAGAAGAAGAAAAAGAAAGATAAATCTGAAAAGGATAA
AAAGAAGAAAAAAACTAGTGAATGAAATAATGGACATCTTTGCTGATCACTGCCAAATTA
TTTTATATTTTTTTTTATTTCCTTGAATGATTGTGTCCACTTTGTTATTTCTGCATTTCT
AGTGTTTTAAGCTGCCGTTTTTATTTGCGACACGTTTAAAATACAGTGTGCCAAGGTGCG
AATAT
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[18-535] 2.5E-237 |
| SMART |
Dyskerin-like (IPR012960) - T[54-112] 1.5E-33 |
| Pfam |
Dyskerin-like (IPR012960) - T[55-112] 2.6E-30 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[56-300] 8.43E-76 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[62-387] 1.7E-161 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[116-232] 6.0E-20 |
| Pfam |
TruB_C (IPR032819) - T[233-299] 9.5E-20 |
| TIGRFAM |
Uncharacterised_CHP00451 (IPR004521) - T[293-372] 2.0E-7 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[302-383] 1.99E-20 |
| ProSiteProfiles |
PUA (IPR002478) - T[302-377] 17.774 |
| Pfam |
PUA (IPR002478) - T[303-376] 2.7E-18 |
| SMART |
PUA (IPR002478) - T[303-377] 1.3E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 75 % | 660 | 0 |