- Transcript 'Harore.CG.MTP2014.S1...' >
- Clone 'AHC0AAA197YJ11' >
- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'KH2012:KH.C1.145.v2....'
Transcript Model
Transcript Id
KH2012:KH.C1.145.v2.A.nonSL3-1
Possible name(s)
DKC1; TRUB1
Gene model
Location
KhC1 [3,998,467 / 4,002,647]
Amino acid sequence
Length: 393
>KH.C1.145.v2.A.nonSL3-1
TCFALIISLLAPLVNADCFVIEIMENGKDSTKKKKKAKNVNVAEAQRSGDFLIEPEDKPP
PKLNTSDWPLLLKNHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFINLDKPANPSSHE
VVAWLRRILKVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHGVIE
NQLKLARAIETLTGALFQRPPLISAVKRQLRVRTIYQSKLLEYDMDKRLGVFWVSCEAGT
YIRTLCVHLGLLLGVGGQMQELRRVRSGIMSENDDLVTMHDVLDAQYQLDHHKDETHLRR
VISPLEKLLVSHKRIILKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAIC
LGIFKEEHDQKRFAGKIWKTKRKNTKRLFRRQP
Nucleotide sequence
Length: 1,715
>KH2012:KH.C1.145.v2.A.nonSL3-1
ACGTGTTTTGCTTTAATCATTTCGCTGCTTGCTCCGCTGGTGAATGCCGATTGTTTTGTA
ATAGAAATAATGGAGAATGGAAAAGACTCTACCAAAAAGAAAAAGAAGGCGAAGAATGTT
AATGTTGCGGAAGCTCAACGAAGTGGAGATTTTTTGATTGAACCTGAAGATAAACCACCA
CCAAAGCTTAACACATCAGATTGGCCACTTTTATTAAAAAATCACAATCAACTGAATATC
CGAACAAATCATTACACTCCGCTTCCTTTTGGTTGTTCACCTTTAAAACGAAATATTCAT
GAATATGTGAGAACTGGATTTATAAATCTCGATAAACCGGCCAACCCATCCTCACATGAA
GTTGTTGCTTGGTTGAGAAGAATCCTGAAGGTAGAGAAGACGGGGCATAGTGGAACACTT
GATCCAAAAGTAACTGGATGTCTCATTGTGTGTGTGGAACGAGCAACACGACTCGTCAAA
TCTCAGCAGTCTGCTGGTAAAGAATATGTCTGCATTGTAAGATTACATGGTGTTATTGAA
AATCAGCTTAAGCTGGCAAGGGCAATTGAAACCCTTACAGGAGCTTTGTTTCAACGACCA
CCTTTAATATCTGCTGTCAAACGACAACTTCGTGTGAGAACAATCTATCAGAGCAAACTA
TTAGAGTATGATATGGACAAAAGACTTGGCGTTTTCTGGGTAAGTTGTGAAGCCGGCACT
TACATTCGAACTCTGTGTGTTCATCTTGGTTTATTGCTCGGAGTTGGAGGTCAGATGCAA
GAGTTACGAAGAGTTCGATCAGGAATTATGTCAGAAAATGATGATCTTGTCACGATGCAT
GATGTGCTGGATGCTCAATATCAGCTTGATCATCATAAAGATGAAACTCATCTTCGAAGG
GTTATCAGTCCATTAGAAAAGTTGCTTGTTTCACATAAAAGAATTATTTTAAAAGACAGT
GCTGTAAATGCAATTTGTTATGGTGCAAAGATATTGTTACCTGGCGTTTTGAGGTATGAA
GATGGAATTGAAGTAAACCAGGAAATTGTGATAATCACAACAAAAGGAGAAGCAATTTGT
CTTGGCATCTTTAAAGAAGAGCATGATCAAAAAAGGTTTGCTGGGAAAATATGGAAAACC
AAACGAAAAAACACCAAAAGATTATTTAGAAGGCAACCCTGATTTTAGCTTAACAGATGT
TGGTACAATCGTTAAAACACCAGAAGCTGCTGAAGACATTTCCACCGCAGGAGTTAAGAG
AAAACGCAATTCCAGTGACAGTTCTTCTGAATCCGCACCTCAAGCTAAAATTGAAGTAAT
TGAAACCCCAGTTACTGTAAAAAAGACTAAAGATGGTAAAGAAAAAAAGAAAGATAAAAA
AGAAAAGAAGGAAAAAAAGAAAGCGAAGAAATCTAAAGGAGATGAATCCCTTGATGCATC
TGTTTTAGATAAAACTGCTGAAACAACAGATGGTGAACTTAAGTCTCCGGAGAAGAAGAA
GAAAAAGAAAGATAAATCTGAAAAGGATAAAAAGAAGAAAAAAACTAGTGAATGAAATAA
TGGACATCTTTGCTGATCACTGCCAAATTATTTTATATTTTTTTTTATTTCCTTGAATGA
TTGTGTCCACTTTGTTATTTCTGCATTTCTAGTGTTTTAAGCTGCCGTTTTTATTTGCGA
CACGTTTAAAATACAGTGTGCCAAGGTGCGAATAT
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[28-365] 6.7E-193 |
| SMART |
Dyskerin-like (IPR012960) - T[64-122] 1.5E-33 |
| Pfam |
Dyskerin-like (IPR012960) - T[65-122] 1.6E-30 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[66-310] 3.06E-76 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[72-363] 3.4E-143 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[126-242] 3.4E-20 |
| Pfam |
TruB_C (IPR032819) - T[243-309] 5.8E-20 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[312-370] 1.33E-13 |
| ProSiteProfiles |
PUA (IPR002478) - T[312-390] 13.312 |
| Pfam |
PUA (IPR002478) - T[313-363] 6.8E-13 |
| SMART |
PUA (IPR002478) - T[313-387] 9.5E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 79.257 % | 524 | 0 |