- Transcript 'KH2012:KH.C1.145.v2....'
Transcript Model
Transcript Id
KH2012:KH.C1.145.v2.R.ND1-1
Possible name(s)
DKC1; TRUB1
Gene model
Location
KhC1 [3,998,467 / 4,002,618]
Amino acid sequence
Length: 383
>KH.C1.145.v2.R.ND1-1
APLVNADCFVIEIMENGKDSTKKKKKAKNVNVAEAQRSGDFLIEPEDKPPPKLNTSDWPL
LLKNHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFINLDKPANPSSHEVVAWLRRILK
VEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVCIVRLHGVIENQLKLARAIE
TLTGALFQRPPLISAVKRQLRVRTIYQSKLLEYDMDKRLGVFWVSCEAGTYIRTLCVHLG
LLLGVGGQMQELRRVRSGIMSENDDLVTMHDVLDAQYQLDHHKDETHLRRVISPLEKLLV
SHKRIILKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLGIFKEEHDQ
KRFAGKIWKTKRKNTKRLFRRQP
Nucleotide sequence
Length: 1,686
>KH2012:KH.C1.145.v2.R.ND1-1
TGCTCCGCTGGTGAATGCCGATTGTTTTGTAATAGAAATAATGGAGAATGGAAAAGACTC
TACCAAAAAGAAAAAGAAGGCGAAGAATGTTAATGTTGCGGAAGCTCAACGAAGTGGAGA
TTTTTTGATTGAACCTGAAGATAAACCACCACCAAAGCTTAACACATCAGATTGGCCACT
TTTATTAAAAAATCACAATCAACTGAATATCCGAACAAATCATTACACTCCGCTTCCTTT
TGGTTGTTCACCTTTAAAACGAAATATTCATGAATATGTGAGAACTGGATTTATAAATCT
CGATAAACCGGCCAACCCATCCTCACATGAAGTTGTTGCTTGGTTGAGAAGAATCCTGAA
GGTAGAGAAGACGGGGCATAGTGGAACACTTGATCCAAAAGTAACTGGATGTCTCATTGT
GTGTGTGGAACGAGCAACACGACTCGTCAAATCTCAGCAGTCTGCTGGTAAAGAATATGT
CTGCATTGTAAGATTACATGGTGTTATTGAAAATCAGCTTAAGCTGGCAAGGGCAATTGA
AACCCTTACAGGAGCTTTGTTTCAACGACCACCTTTAATATCTGCTGTCAAACGACAACT
TCGTGTGAGAACAATCTATCAGAGCAAACTATTAGAGTATGATATGGACAAAAGACTTGG
CGTTTTCTGGGTAAGTTGTGAAGCCGGCACTTACATTCGAACTCTGTGTGTTCATCTTGG
TTTATTGCTCGGAGTTGGAGGTCAGATGCAAGAGTTACGAAGAGTTCGATCAGGAATTAT
GTCAGAAAATGATGATCTTGTCACGATGCATGATGTGCTGGATGCTCAATATCAGCTTGA
TCATCATAAAGATGAAACTCATCTTCGAAGGGTTATCAGTCCATTAGAAAAGTTGCTTGT
TTCACATAAAAGAATTATTTTAAAAGACAGTGCTGTAAATGCAATTTGTTATGGTGCAAA
GATATTGTTACCTGGCGTTTTGAGGTATGAAGATGGAATTGAAGTAAACCAGGAAATTGT
GATAATCACAACAAAAGGAGAAGCAATTTGTCTTGGCATCTTTAAAGAAGAGCATGATCA
AAAAAGGTTTGCTGGGAAAATATGGAAAACCAAACGAAAAAACACCAAAAGATTATTTAG
AAGGCAACCCTGATTTTAGCTTAACAGATGTTGGTACAATCGTTAAAACACCAGAAGCTG
CTGAAGACATTTCCACCGCAGGAGTTAAGAGAAAACGCAATTCCAGTGACAGTTCTTCTG
AATCCGCACCTCAAGCTAAAATTGAAGTAATTGAAACCCCAGTTACTGTAAAAAAGACTA
AAGATGGTAAAGAAAAAAAGAAAGATAAAAAAGAAAAGAAGGAAAAAAAGAAAGCGAAGA
AATCTAAAGGAGATGAATCCCTTGATGCATCTGTTTTAGATAAAACTGCTGAAACAACAG
ATGGTGAACTTAAGTCTCCGGAGAAGAAGAAGAAAAAGAAAGATAAATCTGAAAAGGATA
AAAAGAAGAAAAAAACTAGTGAATGAAATAATGGACATCTTTGCTGATCACTGCCAAATT
ATTTTATATTTTTTTTTATTTCCTTGAATGATTGTGTCCACTTTGTTATTTCTGCATTTC
TAGTGTTTTAAGCTGCCGTTTTTATTTGCGACACGTTTAAAATACAGTGTGCCAAGGTGC
GAATAT
| PANTHER |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[18-355] 6.2E-193 |
| SMART |
Dyskerin-like (IPR012960) - T[54-112] 1.5E-33 |
| Pfam |
Dyskerin-like (IPR012960) - T[55-112] 1.6E-30 |
| SUPERFAMILY |
PsdUridine_synth_cat_dom_sf (IPR020103) - T[56-300] 2.88E-76 |
| TIGRFAM |
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[62-353] 3.2E-143 |
| Pfam |
PsdUridine_synth_N (IPR002501) - T[116-232] 3.2E-20 |
| Pfam |
TruB_C (IPR032819) - T[233-299] 5.6E-20 |
| SUPERFAMILY |
PUA-like_sf (IPR015947) - T[302-360] 1.27E-13 |
| ProSiteProfiles |
PUA (IPR002478) - T[302-380] 13.312 |
| SMART |
PUA (IPR002478) - T[303-377] 9.5E-12 |
| Pfam |
PUA (IPR002478) - T[303-353] 6.6E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DKC1_HUMAN | 79.257 % | 524 | 0 |