- Transcript 'Cisavi.CG.ENS81.R165...' >
- Transcript 'KH2012:KH.C3.697.v2....' >
- Transcript 'KH2012:KH.C1.147.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.147.v1.A.ND1-1
Possible name(s)
RNF17; TDRD1; TDRD15
Gene model
Location
KhC1 [1,983,660 / 1,998,593]
Amino acid sequence
Length: 1,584
>KH.C1.147.v1.A.ND1-1
MSRKPGMNKKKDLLKVIVSDVANVNPSVFYVHLVKERQLLTKLQHDLNQVYCQSWKRKFR
FENKIKPGDTCVAYYLPDHLWYRAEIINVDKNTAQVVYLDYGNLGEVDVEDLRKLISPFD
QLPFYALKCSLYGISPCVSDGVTNVDTWSSAAKCWFEESLLNKTFSAYFPFRKIRSSMGV
SKIVLFYPDLSKTVQDVIVSLGFGFKTEDSCKEPLDLEIGSSSSSLKLSDLSSTEYRSFC
KSSENILTAGSLPNDITCDDFQSQFETRSLPVVYPSTHIGSLVQRSNSGCEVFEVMTKSK
QERTAYALEVSTEHEKSCMKEDYWDLESAKFYKPRKCRTDQCYKPLQSNSKSKKATGKSE
QNFEHRNRTEIPIILKYWKETTTEEINKLMAKKQVSETVPVVDNQKKADVLLSSQQTKYA
KLSPTTVSIFSAELLNKNNGKKVRNSVQNNNKITKRNFDSVPRRFEKRFANQKSVFGNTK
KEENPKHGVKNTSQKENQKSAVKNTKQEIQKGFVKNSKQDEEQKNIVKSSKQEETSVVRP
TGTIINSIKNSKQEENQKSVVKTTNQEKNSVMKLTEKTQNSGNNTKEEENMNVMLSEIPH
ADYMDIKGKFDRDKSVQEKYPTPNAISKSGELTPAKNDTIAEVAQTVGTSTGQCTLSVEP
SRGTTGKKEKLFLEQNKISGDNQSHKKLDEVDASIIKLNEDICPIMDLPDTNSEKKNKSI
KNEDLVNKDLVNVVVCDVNDPSFFHVQLSNANETLENLQRELNDFYSETWSKSLSFSTMP
LKNTVCASLYVDGEWYRAKIIKFNKKDETILVSYIDYGNICYVKMEDLRHIHCKFFDVPC
QAIPCSLHGVAPATHRSGVVNETGWSEFTVSWFDQHTLGKEFSVKFHDTSDRNTTEVTLY
YTDLPQSDVKLKSVADTMVVLGHANFDNETLGKVNTNESCLDQCQAITKAKVQCEENETY
SNTKSHVSLNKSPCESIHENELICSPLVVPPIKKDRPTKQMEVESNDDFNSFIFSEREEV
DRSLISTTKVELPSETSSPTNECLDEFKTEVSDTNSKQTSTRTTPTKPPSTPTDDMVKVK
LSMVENPFSFQIQIEEDQSSLDRFQQELNLFYSQPWTSRLQFKDFPSYGTRCVALCSEVW
YRAFILGFQSSTSVKVHLLDYGRSKTVNKDDICPISSQFTSEPPFSIHCCLYGIQPYMND
WDNTNNILGISCTSWFQYHTDKHEIMAQFIPLPDEDNPVCTQLYFSTIDQNGNKLLWNIS
HIMMLLGLARIDQDITQSIKLLDENIGSSSLSPTSCFSKDEYSVDVLKDSGENENSFSNV
QKYLADSLPQYWNPMAEDFNSNRNNYATNTDDACVAVENVDTCAKICKYYQKGDCWRGDK
CAWEHIPCNTQLLANQSTKVLSYHSMSHETLEADTCAIVRVIMLLKDRDFYAHVIKKSTT
NFTQDFSLVPEKLLELTKDMKTYYSKNRRMFGPVAPTCGEMFVVIHELTFCRVAVLQLSS
FTSIRVKVYLVDYGTTLWLNTDKLLPMVEAFIHLPAQAVHCTNIFEHSIIKKVANMETYA
VRVWESLPVVDSPVPLTLLFKISN
Nucleotide sequence
Length: 4,942
>KH2012:KH.C1.147.v1.A.ND1-1
ATGAGTAGGAAACCAGGCATGAATAAGAAAAAGGATTTATTGAAAGTTATCGTTAGTGAT
GTTGCAAATGTAAACCCAAGCGTGTTTTACGTACATTTGGTGAAAGAACGTCAACTTTTG
ACGAAGCTTCAACATGATTTAAATCAAGTTTATTGTCAAAGCTGGAAAAGGAAGTTTCGT
TTCGAGAATAAGATAAAACCTGGAGACACATGCGTTGCGTATTATCTACCAGATCACTTG
TGGTACAGAGCTGAGATCATAAATGTTGACAAAAACACTGCACAGGTTGTTTACTTGGAT
TATGGGAACCTGGGTGAAGTTGATGTTGAAGATTTACGCAAACTTATTTCTCCTTTTGAT
CAGTTGCCGTTTTATGCCCTAAAATGTTCATTATACGGGATATCACCATGTGTTAGTGAT
GGTGTCACCAATGTTGATACTTGGTCTTCTGCTGCCAAGTGTTGGTTTGAGGAATCTTTA
TTGAACAAAACATTTTCTGCTTATTTCCCTTTTCGAAAAATCAGAAGTTCTATGGGAGTT
TCTAAGATTGTTCTATTCTACCCTGACTTGTCTAAAACGGTGCAAGACGTCATAGTTTCA
CTTGGTTTTGGTTTCAAAACAGAAGACAGTTGCAAAGAACCTTTAGATTTAGAGATTGGC
AGCAGTTCCTCGTCATTAAAACTCTCAGATCTATCATCTACTGAATACAGGTCCTTTTGC
AAATCAAGCGAAAATATTTTGACTGCTGGTTCTCTTCCAAATGATATCACATGTGATGAT
TTCCAAAGCCAGTTTGAGACACGGAGCTTGCCTGTTGTTTACCCATCTACCCATATTGGT
TCCTTGGTACAAAGAAGTAATTCAGGATGTGAAGTGTTTGAAGTAATGACAAAGAGTAAA
CAAGAAAGAACTGCGTATGCCCTGGAAGTTAGTACTGAGCATGAGAAGAGTTGCATGAAA
GAGGATTATTGGGACTTAGAGTCTGCTAAATTTTATAAACCAAGAAAATGCAGAACTGAT
CAATGTTATAAACCTTTACAAAGCAACTCAAAGAGCAAAAAAGCTACAGGGAAGTCTGAA
CAAAATTTTGAGCACAGAAATAGAACGGAAATTCCGATCATTTTAAAATATTGGAAAGAG
ACAACTACTGAAGAAATTAACAAACTCATGGCCAAAAAACAAGTATCAGAAACAGTGCCT
GTAGTTGATAACCAAAAGAAAGCAGATGTTTTACTAAGTTCACAACAAACTAAATATGCA
AAACTCAGTCCAACAACAGTAAGCATTTTTTCCGCAGAACTACTGAATAAAAACAACGGG
AAAAAGGTCAGAAATTCTGTGCAAAACAACAACAAAATTACAAAACGGAACTTTGACAGT
GTACCAAGAAGATTTGAAAAAAGATTTGCAAATCAGAAAAGTGTTTTTGGAAACACAAAG
AAGGAAGAAAATCCAAAGCATGGGGTTAAAAATACAAGTCAAAAAGAAAACCAAAAAAGT
GCTGTGAAAAACACAAAGCAAGAAATTCAAAAAGGGTTTGTTAAAAATTCAAAGCAGGAT
GAAGAACAAAAAAATATTGTAAAAAGTTCTAAGCAGGAAGAAACTTCAGTTGTGAGGCCC
ACAGGAACAATAATAAATTCTATTAAAAATTCAAAACAAGAAGAAAATCAAAAAAGTGTT
GTTAAAACCACAAACCAAGAAAAGAATTCAGTTATGAAGCTAACAGAGAAGACACAAAAC
TCTGGTAATAACACAAAAGAAGAAGAAAATATGAATGTAATGCTGAGTGAGATACCCCAT
GCTGACTACATGGACATAAAAGGTAAATTCGACAGGGATAAAAGTGTACAAGAAAAATAT
CCAACACCAAATGCAATCAGTAAATCTGGAGAGCTTACACCAGCAAAAAATGATACAATT
GCCGAAGTAGCACAAACAGTTGGGACTTCTACAGGTCAATGTACTCTAAGTGTTGAACCA
AGTAGAGGGACAACTGGAAAAAAAGAGAAATTATTTTTAGAGCAAAATAAAATTTCTGGC
GACAATCAGTCTCACAAGAAACTTGATGAGGTTGATGCATCTATTATTAAATTAAATGAA
GATATTTGTCCCATCATGGATCTTCCCGACACTAATTCAGAGAAGAAAAATAAATCGATA
AAAAATGAAGATTTAGTGAACAAAGATCTAGTTAATGTTGTTGTTTGCGATGTAAACGAC
CCAAGTTTTTTCCATGTTCAACTTTCCAATGCGAACGAAACATTGGAAAACCTTCAAAGA
GAATTAAATGATTTCTACTCAGAGACCTGGTCAAAATCTCTCAGTTTTTCCACAATGCCA
TTGAAAAATACCGTGTGTGCTTCATTGTATGTTGATGGTGAATGGTACAGAGCTAAGATT
ATAAAATTTAATAAAAAAGATGAAACAATTTTGGTCAGTTATATTGATTATGGAAATATC
TGTTATGTGAAGATGGAGGATTTGCGGCACATTCATTGCAAGTTTTTTGATGTGCCTTGT
CAAGCAATACCTTGTTCTTTACATGGTGTCGCACCAGCAACACACAGGTCTGGTGTAGTA
AATGAAACTGGTTGGTCAGAATTCACCGTTTCATGGTTTGACCAACATACTCTTGGAAAA
GAATTTTCGGTCAAATTTCACGACACAAGTGATCGTAATACAACTGAAGTGACACTCTAC
TACACTGACTTACCTCAGAGTGACGTAAAGCTAAAAAGTGTAGCTGACACAATGGTGGTA
CTTGGCCATGCAAATTTTGACAACGAAACTTTAGGTAAAGTTAATACCAATGAATCCTGT
TTAGATCAATGCCAAGCCATTACCAAAGCCAAGGTACAGTGTGAAGAAAATGAAACCTAT
TCAAATACAAAGTCACACGTTTCATTAAATAAATCACCTTGTGAAAGTATACATGAAAAT
GAATTGATTTGTTCACCTTTGGTTGTGCCACCGATAAAAAAAGACAGGCCTACAAAACAA
ATGGAAGTTGAAAGCAATGATGATTTTAACAGTTTTATATTTTCTGAAAGAGAAGAGGTG
GACAGATCACTCATTTCCACTACCAAGGTTGAGTTACCAAGCGAAACTAGTTCTCCAACT
AATGAATGTTTAGACGAATTTAAAACTGAGGTTTCAGACACAAACTCAAAGCAGACAAGC
ACACGAACCACTCCAACTAAACCACCATCAACACCAACCGATGATATGGTGAAAGTCAAA
CTATCCATGGTGGAAAATCCTTTCTCTTTTCAAATTCAAATTGAAGAGGATCAAAGCAGT
CTTGACCGGTTCCAACAGGAATTAAACTTGTTTTACTCCCAACCTTGGACCAGTAGATTG
CAGTTTAAAGATTTCCCAAGTTATGGGACTCGTTGTGTGGCTTTGTGCTCTGAGGTTTGG
TACAGAGCATTTATTCTTGGTTTTCAAAGTTCCACCAGTGTGAAGGTTCACTTATTGGAT
TATGGACGTAGTAAAACTGTAAACAAAGATGATATTTGTCCAATTTCAAGTCAATTCACA
TCAGAACCACCTTTTTCTATTCATTGCTGCTTATATGGGATTCAACCATATATGAATGAT
TGGGACAACACAAACAACATACTGGGTATATCATGCACATCATGGTTTCAATATCACACG
GATAAACATGAGATCATGGCACAGTTTATTCCATTACCTGATGAAGACAACCCTGTTTGT
ACTCAGCTCTATTTCTCTACAATTGACCAGAATGGAAACAAATTACTATGGAACATATCC
CACATAATGATGTTGCTTGGTTTGGCTCGTATTGATCAAGATATAACTCAATCAATAAAG
TTACTTGATGAAAATATTGGTTCAAGTTCTCTCTCACCAACTTCATGCTTCTCTAAAGAT
GAATATTCTGTGGATGTTTTGAAAGATTCTGGTGAAAATGAAAATTCGTTTTCAAATGTT
CAGAAATATCTGGCAGATTCACTGCCACAATATTGGAACCCAATGGCGGAAGATTTTAAT
TCGAATCGAAATAACTATGCTACAAACACCGACGATGCATGTGTGGCAGTGGAAAACGTG
GACACTTGTGCAAAAATCTGCAAGTATTATCAGAAAGGAGATTGCTGGAGGGGAGATAAA
TGCGCATGGGAACATATACCATGTAATACACAACTTCTTGCTAACCAATCCACCAAGGTG
TTATCATACCATAGTATGTCCCATGAGACGTTAGAAGCGGATACTTGTGCCATTGTACGT
GTCATAATGCTGCTTAAGGACAGAGACTTTTATGCTCATGTGATAAAAAAATCAACGACA
AACTTTACACAAGATTTCTCTTTGGTGCCTGAAAAGTTGTTGGAGTTGACAAAAGATATG
AAGACCTATTATTCAAAAAATAGAAGAATGTTTGGCCCTGTAGCTCCCACATGTGGTGAA
ATGTTTGTCGTCATTCATGAATTAACATTTTGTCGGGTTGCCGTGTTACAACTGAGTTCT
TTTACCAGCATCAGAGTAAAGGTTTACTTGGTAGATTATGGGACAACACTCTGGCTTAAC
ACAGACAAGTTGCTTCCAATGGTTGAAGCTTTTATTCATCTGCCAGCACAAGCTGTTCAT
TGCACAAATATATTTGAACATTCAATTATTAAAAAAGTGGCCAACATGGAGACTTATGCA
GTTCGAGTTTGGGAAAGTTTGCCAGTTGTGGATTCTCCGGTTCCACTTACACTGTTGTTC
AAAATTTCCAATTAGTGAATTTAGTTTGCCTTTTTTCTTTCTGTTTTAGTTCTTAATCAT
GTTTTTGTTTATATAGTGGTCTTTTAATTTTTACCTCATTTTTTTGTATGCCATTTTATC
ATGTTTCATTTCTTTTGTTCCAATTTCGTTTATCAGTATTTTCTTTCATCTGTTTTCGAA
CCAAAAAAATAAACAAAGGAAT
| Pfam |
Tudor (IPR002999) - T[10-133] 4.4E-22 - T[728-849] 1.9E-25 - T[1072-1193] 3.6E-21 - T[1447-1541] 1.9E-11 |
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[23-45] 1.6E-28 - T[119-201] 1.6E-28 - T[733-760] 1.5E-32 - T[835-924] 1.5E-32 - T[1081-1106] 1.2E-22 - T[1179-1207] 1.2E-22 |
| SMART |
Tudor (IPR002999) - T[63-120] 1.1E-11 - T[778-836] 7.8E-13 - T[1124-1180] 4.5E-8 - T[1474-1532] 1.2 |
| ProSiteProfiles |
Tudor (IPR002999) - T[64-122] 16.265 - T[779-838] 14.875 - T[1125-1182] 9.797 |
| SUPERFAMILY |
Znf_CCCH_sf (IPR036855) - T[1361-1385] 5.65E-5 |
| ProSiteProfiles |
Znf_CCCH (IPR000571) - T[1361-1388] 12.098 |
| Protein Name | Identity | Bit Score | e-value |
|---|