- Transcript 'KH2012:KH.L20.16.v1....' >
- Transcript 'KH2012:KH.C7.219.v1....' >
- Transcript 'KH2012:KH.C1.147.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.147.v1.A.SL2-1
Possible name(s)
RNF17; TDRD1; TDRD15
Gene model
Location
KhC1 [1,983,660 / 1,998,585]
Amino acid sequence
Length: 1,581
>KH.C1.147.v1.A.SL2-1
KPGMNKKKDLLKVIVSDVANVNPSVFYVHLVKERQLLTKLQHDLNQVYCQSWKRKFRFEN
KIKPGDTCVAYYLPDHLWYRAEIINVDKNTAQVVYLDYGNLGEVDVEDLRKLISPFDQLP
FYALKCSLYGISPCVSDGVTNVDTWSSAAKCWFEESLLNKTFSAYFPFRKIRSSMGVSKI
VLFYPDLSKTVQDVIVSLGFGFKTEDSCKEPLDLEIGSSSSSLKLSDLSSTEYRSFCKSS
ENILTAGSLPNDITCDDFQSQFETRSLPVVYPSTHIGSLVQRSNSGCEVFEVMTKSKQER
TAYALEVSTEHEKSCMKEDYWDLESAKFYKPRKCRTDQCYKPLQSNSKSKKATGKSEQNF
EHRNRTEIPIILKYWKETTTEEINKLMAKKQVSETVPVVDNQKKADVLLSSQQTKYAKLS
PTTVSIFSAELLNKNNGKKVRNSVQNNNKITKRNFDSVPRRFEKRFANQKSVFGNTKKEE
NPKHGVKNTSQKENQKSAVKNTKQEIQKGFVKNSKQDEEQKNIVKSSKQEETSVVRPTGT
IINSIKNSKQEENQKSVVKTTNQEKNSVMKLTEKTQNSGNNTKEEENMNVMLSEIPHADY
MDIKGKFDRDKSVQEKYPTPNAISKSGELTPAKNDTIAEVAQTVGTSTGQCTLSVEPSRG
TTGKKEKLFLEQNKISGDNQSHKKLDEVDASIIKLNEDICPIMDLPDTNSEKKNKSIKNE
DLVNKDLVNVVVCDVNDPSFFHVQLSNANETLENLQRELNDFYSETWSKSLSFSTMPLKN
TVCASLYVDGEWYRAKIIKFNKKDETILVSYIDYGNICYVKMEDLRHIHCKFFDVPCQAI
PCSLHGVAPATHRSGVVNETGWSEFTVSWFDQHTLGKEFSVKFHDTSDRNTTEVTLYYTD
LPQSDVKLKSVADTMVVLGHANFDNETLGKVNTNESCLDQCQAITKAKVQCEENETYSNT
KSHVSLNKSPCESIHENELICSPLVVPPIKKDRPTKQMEVESNDDFNSFIFSEREEVDRS
LISTTKVELPSETSSPTNECLDEFKTEVSDTNSKQTSTRTTPTKPPSTPTDDMVKVKLSM
VENPFSFQIQIEEDQSSLDRFQQELNLFYSQPWTSRLQFKDFPSYGTRCVALCSEVWYRA
FILGFQSSTSVKVHLLDYGRSKTVNKDDICPISSQFTSEPPFSIHCCLYGIQPYMNDWDN
TNNILGISCTSWFQYHTDKHEIMAQFIPLPDEDNPVCTQLYFSTIDQNGNKLLWNISHIM
MLLGLARIDQDITQSIKLLDENIGSSSLSPTSCFSKDEYSVDVLKDSGENENSFSNVQKY
LADSLPQYWNPMAEDFNSNRNNYATNTDDACVAVENVDTCAKICKYYQKGDCWRGDKCAW
EHIPCNTQLLANQSTKVLSYHSMSHETLEADTCAIVRVIMLLKDRDFYAHVIKKSTTNFT
QDFSLVPEKLLELTKDMKTYYSKNRRMFGPVAPTCGEMFVVIHELTFCRVAVLQLSSFTS
IRVKVYLVDYGTTLWLNTDKLLPMVEAFIHLPAQAVHCTNIFEHSIIKKVANMETYAVRV
WESLPVVDSPVPLTLLFKISN
Nucleotide sequence
Length: 4,934
>KH2012:KH.C1.147.v1.A.SL2-1
GAAACCAGGCATGAATAAGAAAAAGGATTTATTGAAAGTTATCGTTAGTGATGTTGCAAA
TGTAAACCCAAGCGTGTTTTACGTACATTTGGTGAAAGAACGTCAACTTTTGACGAAGCT
TCAACATGATTTAAATCAAGTTTATTGTCAAAGCTGGAAAAGGAAGTTTCGTTTCGAGAA
TAAGATAAAACCTGGAGACACATGCGTTGCGTATTATCTACCAGATCACTTGTGGTACAG
AGCTGAGATCATAAATGTTGACAAAAACACTGCACAGGTTGTTTACTTGGATTATGGGAA
CCTGGGTGAAGTTGATGTTGAAGATTTACGCAAACTTATTTCTCCTTTTGATCAGTTGCC
GTTTTATGCCCTAAAATGTTCATTATACGGGATATCACCATGTGTTAGTGATGGTGTCAC
CAATGTTGATACTTGGTCTTCTGCTGCCAAGTGTTGGTTTGAGGAATCTTTATTGAACAA
AACATTTTCTGCTTATTTCCCTTTTCGAAAAATCAGAAGTTCTATGGGAGTTTCTAAGAT
TGTTCTATTCTACCCTGACTTGTCTAAAACGGTGCAAGACGTCATAGTTTCACTTGGTTT
TGGTTTCAAAACAGAAGACAGTTGCAAAGAACCTTTAGATTTAGAGATTGGCAGCAGTTC
CTCGTCATTAAAACTCTCAGATCTATCATCTACTGAATACAGGTCCTTTTGCAAATCAAG
CGAAAATATTTTGACTGCTGGTTCTCTTCCAAATGATATCACATGTGATGATTTCCAAAG
CCAGTTTGAGACACGGAGCTTGCCTGTTGTTTACCCATCTACCCATATTGGTTCCTTGGT
ACAAAGAAGTAATTCAGGATGTGAAGTGTTTGAAGTAATGACAAAGAGTAAACAAGAAAG
AACTGCGTATGCCCTGGAAGTTAGTACTGAGCATGAGAAGAGTTGCATGAAAGAGGATTA
TTGGGACTTAGAGTCTGCTAAATTTTATAAACCAAGAAAATGCAGAACTGATCAATGTTA
TAAACCTTTACAAAGCAACTCAAAGAGCAAAAAAGCTACAGGGAAGTCTGAACAAAATTT
TGAGCACAGAAATAGAACGGAAATTCCGATCATTTTAAAATATTGGAAAGAGACAACTAC
TGAAGAAATTAACAAACTCATGGCCAAAAAACAAGTATCAGAAACAGTGCCTGTAGTTGA
TAACCAAAAGAAAGCAGATGTTTTACTAAGTTCACAACAAACTAAATATGCAAAACTCAG
TCCAACAACAGTAAGCATTTTTTCCGCAGAACTACTGAATAAAAACAACGGGAAAAAGGT
CAGAAATTCTGTGCAAAACAACAACAAAATTACAAAACGGAACTTTGACAGTGTACCAAG
AAGATTTGAAAAAAGATTTGCAAATCAGAAAAGTGTTTTTGGAAACACAAAGAAGGAAGA
AAATCCAAAGCATGGGGTTAAAAATACAAGTCAAAAAGAAAACCAAAAAAGTGCTGTGAA
AAACACAAAGCAAGAAATTCAAAAAGGGTTTGTTAAAAATTCAAAGCAGGATGAAGAACA
AAAAAATATTGTAAAAAGTTCTAAGCAGGAAGAAACTTCAGTTGTGAGGCCCACAGGAAC
AATAATAAATTCTATTAAAAATTCAAAACAAGAAGAAAATCAAAAAAGTGTTGTTAAAAC
CACAAACCAAGAAAAGAATTCAGTTATGAAGCTAACAGAGAAGACACAAAACTCTGGTAA
TAACACAAAAGAAGAAGAAAATATGAATGTAATGCTGAGTGAGATACCCCATGCTGACTA
CATGGACATAAAAGGTAAATTCGACAGGGATAAAAGTGTACAAGAAAAATATCCAACACC
AAATGCAATCAGTAAATCTGGAGAGCTTACACCAGCAAAAAATGATACAATTGCCGAAGT
AGCACAAACAGTTGGGACTTCTACAGGTCAATGTACTCTAAGTGTTGAACCAAGTAGAGG
GACAACTGGAAAAAAAGAGAAATTATTTTTAGAGCAAAATAAAATTTCTGGCGACAATCA
GTCTCACAAGAAACTTGATGAGGTTGATGCATCTATTATTAAATTAAATGAAGATATTTG
TCCCATCATGGATCTTCCCGACACTAATTCAGAGAAGAAAAATAAATCGATAAAAAATGA
AGATTTAGTGAACAAAGATCTAGTTAATGTTGTTGTTTGCGATGTAAACGACCCAAGTTT
TTTCCATGTTCAACTTTCCAATGCGAACGAAACATTGGAAAACCTTCAAAGAGAATTAAA
TGATTTCTACTCAGAGACCTGGTCAAAATCTCTCAGTTTTTCCACAATGCCATTGAAAAA
TACCGTGTGTGCTTCATTGTATGTTGATGGTGAATGGTACAGAGCTAAGATTATAAAATT
TAATAAAAAAGATGAAACAATTTTGGTCAGTTATATTGATTATGGAAATATCTGTTATGT
GAAGATGGAGGATTTGCGGCACATTCATTGCAAGTTTTTTGATGTGCCTTGTCAAGCAAT
ACCTTGTTCTTTACATGGTGTCGCACCAGCAACACACAGGTCTGGTGTAGTAAATGAAAC
TGGTTGGTCAGAATTCACCGTTTCATGGTTTGACCAACATACTCTTGGAAAAGAATTTTC
GGTCAAATTTCACGACACAAGTGATCGTAATACAACTGAAGTGACACTCTACTACACTGA
CTTACCTCAGAGTGACGTAAAGCTAAAAAGTGTAGCTGACACAATGGTGGTACTTGGCCA
TGCAAATTTTGACAACGAAACTTTAGGTAAAGTTAATACCAATGAATCCTGTTTAGATCA
ATGCCAAGCCATTACCAAAGCCAAGGTACAGTGTGAAGAAAATGAAACCTATTCAAATAC
AAAGTCACACGTTTCATTAAATAAATCACCTTGTGAAAGTATACATGAAAATGAATTGAT
TTGTTCACCTTTGGTTGTGCCACCGATAAAAAAAGACAGGCCTACAAAACAAATGGAAGT
TGAAAGCAATGATGATTTTAACAGTTTTATATTTTCTGAAAGAGAAGAGGTGGACAGATC
ACTCATTTCCACTACCAAGGTTGAGTTACCAAGCGAAACTAGTTCTCCAACTAATGAATG
TTTAGACGAATTTAAAACTGAGGTTTCAGACACAAACTCAAAGCAGACAAGCACACGAAC
CACTCCAACTAAACCACCATCAACACCAACCGATGATATGGTGAAAGTCAAACTATCCAT
GGTGGAAAATCCTTTCTCTTTTCAAATTCAAATTGAAGAGGATCAAAGCAGTCTTGACCG
GTTCCAACAGGAATTAAACTTGTTTTACTCCCAACCTTGGACCAGTAGATTGCAGTTTAA
AGATTTCCCAAGTTATGGGACTCGTTGTGTGGCTTTGTGCTCTGAGGTTTGGTACAGAGC
ATTTATTCTTGGTTTTCAAAGTTCCACCAGTGTGAAGGTTCACTTATTGGATTATGGACG
TAGTAAAACTGTAAACAAAGATGATATTTGTCCAATTTCAAGTCAATTCACATCAGAACC
ACCTTTTTCTATTCATTGCTGCTTATATGGGATTCAACCATATATGAATGATTGGGACAA
CACAAACAACATACTGGGTATATCATGCACATCATGGTTTCAATATCACACGGATAAACA
TGAGATCATGGCACAGTTTATTCCATTACCTGATGAAGACAACCCTGTTTGTACTCAGCT
CTATTTCTCTACAATTGACCAGAATGGAAACAAATTACTATGGAACATATCCCACATAAT
GATGTTGCTTGGTTTGGCTCGTATTGATCAAGATATAACTCAATCAATAAAGTTACTTGA
TGAAAATATTGGTTCAAGTTCTCTCTCACCAACTTCATGCTTCTCTAAAGATGAATATTC
TGTGGATGTTTTGAAAGATTCTGGTGAAAATGAAAATTCGTTTTCAAATGTTCAGAAATA
TCTGGCAGATTCACTGCCACAATATTGGAACCCAATGGCGGAAGATTTTAATTCGAATCG
AAATAACTATGCTACAAACACCGACGATGCATGTGTGGCAGTGGAAAACGTGGACACTTG
TGCAAAAATCTGCAAGTATTATCAGAAAGGAGATTGCTGGAGGGGAGATAAATGCGCATG
GGAACATATACCATGTAATACACAACTTCTTGCTAACCAATCCACCAAGGTGTTATCATA
CCATAGTATGTCCCATGAGACGTTAGAAGCGGATACTTGTGCCATTGTACGTGTCATAAT
GCTGCTTAAGGACAGAGACTTTTATGCTCATGTGATAAAAAAATCAACGACAAACTTTAC
ACAAGATTTCTCTTTGGTGCCTGAAAAGTTGTTGGAGTTGACAAAAGATATGAAGACCTA
TTATTCAAAAAATAGAAGAATGTTTGGCCCTGTAGCTCCCACATGTGGTGAAATGTTTGT
CGTCATTCATGAATTAACATTTTGTCGGGTTGCCGTGTTACAACTGAGTTCTTTTACCAG
CATCAGAGTAAAGGTTTACTTGGTAGATTATGGGACAACACTCTGGCTTAACACAGACAA
GTTGCTTCCAATGGTTGAAGCTTTTATTCATCTGCCAGCACAAGCTGTTCATTGCACAAA
TATATTTGAACATTCAATTATTAAAAAAGTGGCCAACATGGAGACTTATGCAGTTCGAGT
TTGGGAAAGTTTGCCAGTTGTGGATTCTCCGGTTCCACTTACACTGTTGTTCAAAATTTC
CAATTAGTGAATTTAGTTTGCCTTTTTTCTTTCTGTTTTAGTTCTTAATCATGTTTTTGT
TTATATAGTGGTCTTTTAATTTTTACCTCATTTTTTTGTATGCCATTTTATCATGTTTCA
TTTCTTTTGTTCCAATTTCGTTTATCAGTATTTTCTTTCATCTGTTTTCGAACCAAAAAA
ATAAACAAAGGAAT
| Pfam |
Tudor (IPR002999) - T[7-130] 4.4E-22 - T[725-846] 1.9E-25 - T[1069-1190] 3.6E-21 - T[1444-1538] 1.9E-11 |
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[20-42] 1.6E-28 - T[116-198] 1.6E-28 - T[730-757] 1.5E-32 - T[832-921] 1.5E-32 |
| SMART |
Tudor (IPR002999) - T[60-117] 1.1E-11 - T[775-833] 7.8E-13 - T[1121-1177] 4.5E-8 - T[1471-1529] 1.2 |
| ProSiteProfiles |
Tudor (IPR002999) - T[61-119] 16.265 - T[776-835] 14.875 - T[1122-1179] 9.797 |
| ProSiteProfiles |
Znf_CCCH (IPR000571) - T[1358-1385] 12.098 |
| SUPERFAMILY |
Znf_CCCH_sf (IPR036855) - T[1358-1382] 5.65E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|